miRNA display CGI


Results 41 - 60 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12810 5' -59.5 NC_003387.1 + 44645 0.72 0.212049
Target:  5'- gGCGCCgacCGGCAGCGgguuagCG-CGGGCCg -3'
miRNA:   3'- gCGCGGga-GCUGUCGCa-----GCuGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 15501 0.72 0.217515
Target:  5'- uCGuCGCCCaCGGCGGCGUUuAUGAGCa -3'
miRNA:   3'- -GC-GCGGGaGCUGUCGCAGcUGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 47293 0.72 0.217515
Target:  5'- gGCGCCCUCGGuCgAGUuguccUCGGCGGGCUu -3'
miRNA:   3'- gCGCGGGAGCU-G-UCGc----AGCUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 27909 0.72 0.2231
Target:  5'- aCGCGgCCUUGAcCGGCGgCGugGGcGCCu -3'
miRNA:   3'- -GCGCgGGAGCU-GUCGCaGCugCU-CGG- -5'
12810 5' -59.5 NC_003387.1 + 1166 0.72 0.2231
Target:  5'- gGUGCUUagCGGCAGCGguagCGGCGGGCg -3'
miRNA:   3'- gCGCGGGa-GCUGUCGCa---GCUGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 17089 0.72 0.2231
Target:  5'- aGUGCCCgccCGGCcGCcUCGGCGGGCUc -3'
miRNA:   3'- gCGCGGGa--GCUGuCGcAGCUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 7662 0.72 0.2231
Target:  5'- aCG-GCCCUCGAC-GCGcUCGGCGA-CCu -3'
miRNA:   3'- -GCgCGGGAGCUGuCGC-AGCUGCUcGG- -5'
12810 5' -59.5 NC_003387.1 + 8816 0.72 0.228807
Target:  5'- uCGCGCCCgaacUUGGCcGUaUCGACGAGCg -3'
miRNA:   3'- -GCGCGGG----AGCUGuCGcAGCUGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 49181 0.72 0.234637
Target:  5'- uCGCGCaggCGGCGGcCGUCGACguugcuGAGCCc -3'
miRNA:   3'- -GCGCGggaGCUGUC-GCAGCUG------CUCGG- -5'
12810 5' -59.5 NC_003387.1 + 39535 0.72 0.240591
Target:  5'- cCGCGCuUCUCGAUcGCGUCGGCcaGGUCg -3'
miRNA:   3'- -GCGCG-GGAGCUGuCGCAGCUGc-UCGG- -5'
12810 5' -59.5 NC_003387.1 + 29852 0.71 0.24667
Target:  5'- gGCGCCCcugucgauucgUCGGCGagggcgcuuucGUGUUGACGGGUCa -3'
miRNA:   3'- gCGCGGG-----------AGCUGU-----------CGCAGCUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 48134 0.71 0.24667
Target:  5'- gCGCGCgUUCGAgcuuguCGGCcUCGGCGAGCa -3'
miRNA:   3'- -GCGCGgGAGCU------GUCGcAGCUGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 4363 0.71 0.24667
Target:  5'- -uUGCCCUUGGC-GCGcUCGGCG-GCCa -3'
miRNA:   3'- gcGCGGGAGCUGuCGC-AGCUGCuCGG- -5'
12810 5' -59.5 NC_003387.1 + 22499 0.71 0.24667
Target:  5'- gCGaCGgCCUCGGCGGCGcgcUCGACGucGGCg -3'
miRNA:   3'- -GC-GCgGGAGCUGUCGC---AGCUGC--UCGg -5'
12810 5' -59.5 NC_003387.1 + 36339 0.71 0.24667
Target:  5'- gGuCGUCgUCGACuGCGaaaCGACGGGCCu -3'
miRNA:   3'- gC-GCGGgAGCUGuCGCa--GCUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 22197 0.71 0.25225
Target:  5'- gGCGCCCguugcacUUGuCGGgGUCGACGuuGCCg -3'
miRNA:   3'- gCGCGGG-------AGCuGUCgCAGCUGCu-CGG- -5'
12810 5' -59.5 NC_003387.1 + 48696 0.71 0.252877
Target:  5'- cCGCacGCCCUCGcGCuuGGCGUUGuCGAGCa -3'
miRNA:   3'- -GCG--CGGGAGC-UG--UCGCAGCuGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 15422 0.71 0.259211
Target:  5'- gGCGCggUCGACGaccGCGcCGACGAGCg -3'
miRNA:   3'- gCGCGggAGCUGU---CGCaGCUGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 41270 0.71 0.259211
Target:  5'- aGCGCCC-CGGCGGCGagcugcagCG-CGGGCa -3'
miRNA:   3'- gCGCGGGaGCUGUCGCa-------GCuGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 16039 0.71 0.259211
Target:  5'- aGCuuGCCCgCGgugaacGCGGCcagGUCGGCGAGCCg -3'
miRNA:   3'- gCG--CGGGaGC------UGUCG---CAGCUGCUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.