miRNA display CGI


Results 61 - 80 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12810 5' -59.5 NC_003387.1 + 23031 0.71 0.263722
Target:  5'- aGCGCCUcgaccucggccacgUCGACGucGaCGUCGGCGAGgCg -3'
miRNA:   3'- gCGCGGG--------------AGCUGU--C-GCAGCUGCUCgG- -5'
12810 5' -59.5 NC_003387.1 + 12272 0.71 0.272267
Target:  5'- cCGCGCCUggCGAcCGGCGgccggaUCaGCGGGCCg -3'
miRNA:   3'- -GCGCGGGa-GCU-GUCGC------AGcUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 18975 0.71 0.272267
Target:  5'- gGCaCCC-CGGCgAGCaUCGACGAGCUg -3'
miRNA:   3'- gCGcGGGaGCUG-UCGcAGCUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 28828 0.71 0.272267
Target:  5'- aGC-CCCUCGgcgcGCAGCacGUCGGCcAGCCa -3'
miRNA:   3'- gCGcGGGAGC----UGUCG--CAGCUGcUCGG- -5'
12810 5' -59.5 NC_003387.1 + 15003 0.71 0.272267
Target:  5'- uGcCGCCCUCGGCu-UGUCGcGCGGGUCg -3'
miRNA:   3'- gC-GCGGGAGCUGucGCAGC-UGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 8194 0.71 0.272267
Target:  5'- gCGCGUuuUCGACAGCGaCGuCGuGCg -3'
miRNA:   3'- -GCGCGggAGCUGUCGCaGCuGCuCGg -5'
12810 5' -59.5 NC_003387.1 + 37855 0.71 0.272267
Target:  5'- uGCGCCCggCGGCucGCcUCGACGAuGCUu -3'
miRNA:   3'- gCGCGGGa-GCUGu-CGcAGCUGCU-CGG- -5'
12810 5' -59.5 NC_003387.1 + 51382 0.71 0.278991
Target:  5'- gGCGUCCUCGuCGGCGgaaaucUCGACGuacCCg -3'
miRNA:   3'- gCGCGGGAGCuGUCGC------AGCUGCuc-GG- -5'
12810 5' -59.5 NC_003387.1 + 711 0.71 0.278991
Target:  5'- uGCGCCgCaaGGCAucGUGUCGACG-GCCu -3'
miRNA:   3'- gCGCGG-GagCUGU--CGCAGCUGCuCGG- -5'
12810 5' -59.5 NC_003387.1 + 24125 0.71 0.278991
Target:  5'- aCGUGCCCguacgCGGCGGUGUUGAgcuugaGGGCg -3'
miRNA:   3'- -GCGCGGGa----GCUGUCGCAGCUg-----CUCGg -5'
12810 5' -59.5 NC_003387.1 + 7444 0.7 0.283776
Target:  5'- -aUGCCCgccCGACGGgGUCGGCGuggcgauccauuccAGCCg -3'
miRNA:   3'- gcGCGGGa--GCUGUCgCAGCUGC--------------UCGG- -5'
12810 5' -59.5 NC_003387.1 + 8013 0.7 0.287929
Target:  5'- uCGUGCCCUCugucggcccgcugguGGCcGCGcgagccuaucugcUCGACGAGCUg -3'
miRNA:   3'- -GCGCGGGAG---------------CUGuCGC-------------AGCUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 17177 0.7 0.292129
Target:  5'- uGCGCCgcCUgGGCGGCGaCGGCGcgaaaguGGCCg -3'
miRNA:   3'- gCGCGG--GAgCUGUCGCaGCUGC-------UCGG- -5'
12810 5' -59.5 NC_003387.1 + 2320 0.7 0.292834
Target:  5'- uGcCGCCCgacguacagcUCGGCGGUGUCGA--GGCCg -3'
miRNA:   3'- gC-GCGGG----------AGCUGUCGCAGCUgcUCGG- -5'
12810 5' -59.5 NC_003387.1 + 17574 0.7 0.292834
Target:  5'- -cCGCCCUCGcUGGUGUCGuGCG-GCCa -3'
miRNA:   3'- gcGCGGGAGCuGUCGCAGC-UGCuCGG- -5'
12810 5' -59.5 NC_003387.1 + 8114 0.7 0.299236
Target:  5'- uCGCGCCaCggccCGACGGCGUCGcuCGAcuccuugaggaucGCCu -3'
miRNA:   3'- -GCGCGG-Ga---GCUGUCGCAGCu-GCU-------------CGG- -5'
12810 5' -59.5 NC_003387.1 + 32867 0.7 0.299954
Target:  5'- gGCGCCCagcgccgCGuCGGCGUCGuCGAGa- -3'
miRNA:   3'- gCGCGGGa------GCuGUCGCAGCuGCUCgg -5'
12810 5' -59.5 NC_003387.1 + 4410 0.7 0.299954
Target:  5'- gCGCGCCgcCUCGAUuuCGUCGagGCGGGCg -3'
miRNA:   3'- -GCGCGG--GAGCUGucGCAGC--UGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 13309 0.7 0.299954
Target:  5'- gGCGgCCUCGACGGCaG-CGACcuGGGCa -3'
miRNA:   3'- gCGCgGGAGCUGUCG-CaGCUG--CUCGg -5'
12810 5' -59.5 NC_003387.1 + 51358 0.7 0.299954
Target:  5'- aGCGCCgaCGGCgaGGUGcCGugGAGCg -3'
miRNA:   3'- gCGCGGgaGCUG--UCGCaGCugCUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.