miRNA display CGI


Results 81 - 100 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12810 5' -59.5 NC_003387.1 + 4410 0.7 0.299954
Target:  5'- gCGCGCCgcCUCGAUuuCGUCGagGCGGGCg -3'
miRNA:   3'- -GCGCGG--GAGCUGucGCAGC--UGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 47187 0.7 0.302839
Target:  5'- gGuCGCCCUCGGggcucagguggccgcCGGUGUCGGCauugugguGGGCCu -3'
miRNA:   3'- gC-GCGGGAGCU---------------GUCGCAGCUG--------CUCGG- -5'
12810 5' -59.5 NC_003387.1 + 22968 0.7 0.306476
Target:  5'- gGCGCCCcggucaucgugUCgGGCGGCGcCGACGAcggcaagGCCc -3'
miRNA:   3'- gCGCGGG-----------AG-CUGUCGCaGCUGCU-------CGG- -5'
12810 5' -59.5 NC_003387.1 + 47703 0.7 0.307207
Target:  5'- gCGcCGCCCUCGugAGCcugccgugcugGUCGAaccaCGcGGCCa -3'
miRNA:   3'- -GC-GCGGGAGCugUCG-----------CAGCU----GC-UCGG- -5'
12810 5' -59.5 NC_003387.1 + 48305 0.7 0.307207
Target:  5'- aCGCcuuGCCCagcuCGGCGUCGACGuucuGCCa -3'
miRNA:   3'- -GCG---CGGGagcuGUCGCAGCUGCu---CGG- -5'
12810 5' -59.5 NC_003387.1 + 34163 0.7 0.307207
Target:  5'- gCGuCGCCCUCGGCcuuGCGcUCGaACGAcucgcgcacaaGCCa -3'
miRNA:   3'- -GC-GCGGGAGCUGu--CGC-AGC-UGCU-----------CGG- -5'
12810 5' -59.5 NC_003387.1 + 19933 0.7 0.314594
Target:  5'- uGCGCCaggUCGACccGGCGguacgCGGCGGGUg -3'
miRNA:   3'- gCGCGGg--AGCUG--UCGCa----GCUGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 17160 0.7 0.314594
Target:  5'- gGCGCCgagguaguccaUCG-CGGCGUCGugcuccugGCGGGCCa -3'
miRNA:   3'- gCGCGGg----------AGCuGUCGCAGC--------UGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 17039 0.7 0.314594
Target:  5'- uGcCGCCCUCGcCgGGCGUCGuCGAGg- -3'
miRNA:   3'- gC-GCGGGAGCuG-UCGCAGCuGCUCgg -5'
12810 5' -59.5 NC_003387.1 + 21783 0.7 0.314594
Target:  5'- uCGCGCUCaaguugaccgCGGCGGCcagcUCGGCGAGCg -3'
miRNA:   3'- -GCGCGGGa---------GCUGUCGc---AGCUGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 10410 0.7 0.317586
Target:  5'- gGCGCUcggcaagcaguacggCUCG-CGGCuGUCGGCGGGCa -3'
miRNA:   3'- gCGCGG---------------GAGCuGUCG-CAGCUGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 20450 0.7 0.321356
Target:  5'- uCGCGCCCccacgccUUGuCGGCcUCGGCGAcgGCCa -3'
miRNA:   3'- -GCGCGGG-------AGCuGUCGcAGCUGCU--CGG- -5'
12810 5' -59.5 NC_003387.1 + 46174 0.7 0.322114
Target:  5'- uGCGCCgugucccggCUCGcauguaucuGCAGCG-CGACGGGCg -3'
miRNA:   3'- gCGCGG---------GAGC---------UGUCGCaGCUGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 21687 0.7 0.322114
Target:  5'- cCGaCGCCCU-GGCcGCcUCGGCGAGCg -3'
miRNA:   3'- -GC-GCGGGAgCUGuCGcAGCUGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 2027 0.7 0.322114
Target:  5'- gGUGCCgC-CGACGGCcgccGUCGcCGAGCUg -3'
miRNA:   3'- gCGCGG-GaGCUGUCG----CAGCuGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 48400 0.69 0.329768
Target:  5'- uGCGCCUUCu-CGGCGUUGAgccacugcCGGGUCg -3'
miRNA:   3'- gCGCGGGAGcuGUCGCAGCU--------GCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 12574 0.69 0.329768
Target:  5'- uCGgGCCgC-CGACGGUGUCGccgUGGGCCu -3'
miRNA:   3'- -GCgCGG-GaGCUGUCGCAGCu--GCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 49619 0.69 0.329768
Target:  5'- gGCgGCCC-CGAUuuacgAGCcgGUCGGCGAGCUu -3'
miRNA:   3'- gCG-CGGGaGCUG-----UCG--CAGCUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 1300 0.69 0.329768
Target:  5'- uCGaCGCCCU-GGCGGgcgaCGUCGACGAcGUCg -3'
miRNA:   3'- -GC-GCGGGAgCUGUC----GCAGCUGCU-CGG- -5'
12810 5' -59.5 NC_003387.1 + 33822 0.69 0.329768
Target:  5'- gCGCGCCgC-CGACGGCGucuuuaagcagcUCGAUGAuGCUc -3'
miRNA:   3'- -GCGCGG-GaGCUGUCGC------------AGCUGCU-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.