Results 61 - 80 of 243 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12810 | 5' | -59.5 | NC_003387.1 | + | 43409 | 0.67 | 0.467716 |
Target: 5'- uGUGCUCggaggucaacgcCGACAGCaaguUCGACGAGgCCa -3' miRNA: 3'- gCGCGGGa-----------GCUGUCGc---AGCUGCUC-GG- -5' |
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12810 | 5' | -59.5 | NC_003387.1 | + | 44589 | 0.67 | 0.460019 |
Target: 5'- uCGCuGCCCggcCGggacaGCAGCG-CGuACGAGCUg -3' miRNA: 3'- -GCG-CGGGa--GC-----UGUCGCaGC-UGCUCGG- -5' |
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12810 | 5' | -59.5 | NC_003387.1 | + | 50450 | 0.67 | 0.460019 |
Target: 5'- gGCGCCCUCGggcaccucGgGGCGcCcACGcAGCCc -3' miRNA: 3'- gCGCGGGAGC--------UgUCGCaGcUGC-UCGG- -5' |
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12810 | 5' | -59.5 | NC_003387.1 | + | 7509 | 0.67 | 0.460019 |
Target: 5'- -aCGCCacgaUCGGCcGCGggUCGAaCGGGCCg -3' miRNA: 3'- gcGCGGg---AGCUGuCGC--AGCU-GCUCGG- -5' |
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12810 | 5' | -59.5 | NC_003387.1 | + | 9997 | 0.67 | 0.460019 |
Target: 5'- -aCGCCCUgaCGAgCAG-GUCGGCGuuGCCg -3' miRNA: 3'- gcGCGGGA--GCU-GUCgCAGCUGCu-CGG- -5' |
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12810 | 5' | -59.5 | NC_003387.1 | + | 13616 | 0.67 | 0.460019 |
Target: 5'- uCGUGCaCCUCGAUGaaGUaGACGAGCg -3' miRNA: 3'- -GCGCG-GGAGCUGUcgCAgCUGCUCGg -5' |
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12810 | 5' | -59.5 | NC_003387.1 | + | 38163 | 0.67 | 0.460019 |
Target: 5'- aCG-GCCa--GGCGGCGUCGACc-GCCa -3' miRNA: 3'- -GCgCGGgagCUGUCGCAGCUGcuCGG- -5' |
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12810 | 5' | -59.5 | NC_003387.1 | + | 42292 | 0.67 | 0.460019 |
Target: 5'- uCGaUGCCCgcCGACAGC--CG-CGAGCCg -3' miRNA: 3'- -GC-GCGGGa-GCUGUCGcaGCuGCUCGG- -5' |
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12810 | 5' | -59.5 | NC_003387.1 | + | 20156 | 0.67 | 0.450494 |
Target: 5'- aGCGCgaaCC-CGAgGGCGUCGA-GGGCg -3' miRNA: 3'- gCGCG---GGaGCUgUCGCAGCUgCUCGg -5' |
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12810 | 5' | -59.5 | NC_003387.1 | + | 11701 | 0.67 | 0.450494 |
Target: 5'- uGuCGCCgUCGAC-GCaGUCGACccGGCCg -3' miRNA: 3'- gC-GCGGgAGCUGuCG-CAGCUGc-UCGG- -5' |
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12810 | 5' | -59.5 | NC_003387.1 | + | 41016 | 0.67 | 0.450494 |
Target: 5'- -aCGCCCaaaucgCGACAGCGagccCGACGA-CCg -3' miRNA: 3'- gcGCGGGa-----GCUGUCGCa---GCUGCUcGG- -5' |
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12810 | 5' | -59.5 | NC_003387.1 | + | 18202 | 0.67 | 0.450494 |
Target: 5'- gGUGCgCCUCGGCGaCG-CGACGA-CCg -3' miRNA: 3'- gCGCG-GGAGCUGUcGCaGCUGCUcGG- -5' |
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12810 | 5' | -59.5 | NC_003387.1 | + | 40383 | 0.67 | 0.450494 |
Target: 5'- aGgG-CCUCGACGuCGgCGGCGAGCUg -3' miRNA: 3'- gCgCgGGAGCUGUcGCaGCUGCUCGG- -5' |
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12810 | 5' | -59.5 | NC_003387.1 | + | 37788 | 0.67 | 0.444831 |
Target: 5'- gCGCGCCUgggcgcagcacccgCGgucgcaGCAGCGcgCGAuCGGGCCg -3' miRNA: 3'- -GCGCGGGa-------------GC------UGUCGCa-GCU-GCUCGG- -5' |
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12810 | 5' | -59.5 | NC_003387.1 | + | 28001 | 0.67 | 0.441078 |
Target: 5'- -cCGCCCgaUCGAgGGCacCGACGAGCg -3' miRNA: 3'- gcGCGGG--AGCUgUCGcaGCUGCUCGg -5' |
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12810 | 5' | -59.5 | NC_003387.1 | + | 42964 | 0.67 | 0.441078 |
Target: 5'- uGcCGCCC-CGGCAuGCG-CG-UGAGCCu -3' miRNA: 3'- gC-GCGGGaGCUGU-CGCaGCuGCUCGG- -5' |
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12810 | 5' | -59.5 | NC_003387.1 | + | 34237 | 0.67 | 0.441078 |
Target: 5'- uGCagGCCCUCGG-GGCGcUCGACcGGCUg -3' miRNA: 3'- gCG--CGGGAGCUgUCGC-AGCUGcUCGG- -5' |
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12810 | 5' | -59.5 | NC_003387.1 | + | 27141 | 0.67 | 0.441078 |
Target: 5'- cCGUGCCCgc--CGGgGUCGGCGccGCCg -3' miRNA: 3'- -GCGCGGGagcuGUCgCAGCUGCu-CGG- -5' |
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12810 | 5' | -59.5 | NC_003387.1 | + | 48731 | 0.67 | 0.435482 |
Target: 5'- uGCGCCg-CGACGaguccaugaccgcgcGgGUCGcCGAGCCu -3' miRNA: 3'- gCGCGGgaGCUGU---------------CgCAGCuGCUCGG- -5' |
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12810 | 5' | -59.5 | NC_003387.1 | + | 21972 | 0.67 | 0.431774 |
Target: 5'- -aCGCCCgacACGGUGcugccCGACGAGCCg -3' miRNA: 3'- gcGCGGGagcUGUCGCa----GCUGCUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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