miRNA display CGI


Results 41 - 60 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12810 5' -59.5 NC_003387.1 + 9339 0.73 0.191357
Target:  5'- uCGaCGUCgUCGAgcacCAGgaCGUCGACGAGCCg -3'
miRNA:   3'- -GC-GCGGgAGCU----GUC--GCAGCUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 9997 0.67 0.460019
Target:  5'- -aCGCCCUgaCGAgCAG-GUCGGCGuuGCCg -3'
miRNA:   3'- gcGCGGGA--GCU-GUCgCAGCUGCu-CGG- -5'
12810 5' -59.5 NC_003387.1 + 10011 0.75 0.139599
Target:  5'- cCGCGgCCgggCGACGaCGaCGACGAGCCg -3'
miRNA:   3'- -GCGCgGGa--GCUGUcGCaGCUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 10168 0.73 0.200956
Target:  5'- gCGCGCCaaucucgCUCGccagcuCGGCGUCGgucauGCGGGCCg -3'
miRNA:   3'- -GCGCGG-------GAGCu-----GUCGCAGC-----UGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 10410 0.7 0.317586
Target:  5'- gGCGCUcggcaagcaguacggCUCG-CGGCuGUCGGCGGGCa -3'
miRNA:   3'- gCGCGG---------------GAGCuGUCG-CAGCUGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 10656 0.66 0.509152
Target:  5'- gGCGUucggCCUCGAC-GCGgcugCGACcacGGCCg -3'
miRNA:   3'- gCGCG----GGAGCUGuCGCa---GCUGc--UCGG- -5'
12810 5' -59.5 NC_003387.1 + 10694 0.66 0.509152
Target:  5'- gGCGCCCU----GGCGcUCGGCGAccaucacgGCCa -3'
miRNA:   3'- gCGCGGGAgcugUCGC-AGCUGCU--------CGG- -5'
12810 5' -59.5 NC_003387.1 + 10778 0.67 0.479384
Target:  5'- gGCgGCCUgcaucgucgggUCGuCGGCGUCGGCG-GCa -3'
miRNA:   3'- gCG-CGGG-----------AGCuGUCGCAGCUGCuCGg -5'
12810 5' -59.5 NC_003387.1 + 10860 0.66 0.489215
Target:  5'- cCGUGCCCgcucaucaCGACcGcCGUCGGCcgcuGGCCg -3'
miRNA:   3'- -GCGCGGGa-------GCUGuC-GCAGCUGc---UCGG- -5'
12810 5' -59.5 NC_003387.1 + 11019 0.69 0.345474
Target:  5'- gGcCGCCUUCGuCGGCGcCG-CGAcGCCg -3'
miRNA:   3'- gC-GCGGGAGCuGUCGCaGCuGCU-CGG- -5'
12810 5' -59.5 NC_003387.1 + 11297 0.66 0.519249
Target:  5'- uGCGaCCggcggCGACAGCGgcaagcUCGGCGAGa- -3'
miRNA:   3'- gCGCgGGa----GCUGUCGC------AGCUGCUCgg -5'
12810 5' -59.5 NC_003387.1 + 11651 0.77 0.106622
Target:  5'- uCGC-CCCUCGAUcGCGUCGACagcGGCCu -3'
miRNA:   3'- -GCGcGGGAGCUGuCGCAGCUGc--UCGG- -5'
12810 5' -59.5 NC_003387.1 + 11701 0.67 0.450494
Target:  5'- uGuCGCCgUCGAC-GCaGUCGACccGGCCg -3'
miRNA:   3'- gC-GCGGgAGCUGuCG-CAGCUGc-UCGG- -5'
12810 5' -59.5 NC_003387.1 + 12192 0.66 0.489215
Target:  5'- -aCGCCCUCgGGCAG-GUCGcugcucggugcCGGGCCa -3'
miRNA:   3'- gcGCGGGAG-CUGUCgCAGCu----------GCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 12272 0.71 0.272267
Target:  5'- cCGCGCCUggCGAcCGGCGgccggaUCaGCGGGCCg -3'
miRNA:   3'- -GCGCGGGa-GCU-GUCGC------AGcUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 12574 0.69 0.329768
Target:  5'- uCGgGCCgC-CGACGGUGUCGccgUGGGCCu -3'
miRNA:   3'- -GCgCGG-GaGCUGUCGCAGCu--GCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 12798 0.68 0.378471
Target:  5'- uGCGCgCCUCGcaacgaccGCAGuCGUCGcCGGGgCa -3'
miRNA:   3'- gCGCG-GGAGC--------UGUC-GCAGCuGCUCgG- -5'
12810 5' -59.5 NC_003387.1 + 12899 0.8 0.064947
Target:  5'- aGCGgCCUCGACGGCGUgGGgGuGCCu -3'
miRNA:   3'- gCGCgGGAGCUGUCGCAgCUgCuCGG- -5'
12810 5' -59.5 NC_003387.1 + 13309 0.7 0.299954
Target:  5'- gGCGgCCUCGACGGCaG-CGACcuGGGCa -3'
miRNA:   3'- gCGCgGGAGCUGUCG-CaGCUG--CUCGg -5'
12810 5' -59.5 NC_003387.1 + 13556 0.67 0.479384
Target:  5'- aGgGCCUg-GGCAGCccgaUCGACGGGCa -3'
miRNA:   3'- gCgCGGGagCUGUCGc---AGCUGCUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.