miRNA display CGI


Results 61 - 80 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12810 5' -59.5 NC_003387.1 + 13616 0.67 0.460019
Target:  5'- uCGUGCaCCUCGAUGaaGUaGACGAGCg -3'
miRNA:   3'- -GCGCG-GGAGCUGUcgCAgCUGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 13675 0.69 0.343085
Target:  5'- gGCGCCgUCGACGcuaUGUCGGCGuucgucccgagcgcGGCCc -3'
miRNA:   3'- gCGCGGgAGCUGUc--GCAGCUGC--------------UCGG- -5'
12810 5' -59.5 NC_003387.1 + 13830 0.66 0.529423
Target:  5'- cCGCaCCCgcuccacgguUCGGC-GCGUcuagcuaacggcCGGCGAGCCg -3'
miRNA:   3'- -GCGcGGG----------AGCUGuCGCA------------GCUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 13886 0.66 0.53967
Target:  5'- -aUGCCUugagcugCGGCGGC-UCGuCGAGCCa -3'
miRNA:   3'- gcGCGGGa------GCUGUCGcAGCuGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 14220 0.66 0.508147
Target:  5'- uGcCGCCCUCGcacgcccACGGCcgcUCGGgauCGGGCCg -3'
miRNA:   3'- gC-GCGGGAGC-------UGUCGc--AGCU---GCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 14519 0.69 0.364192
Target:  5'- uGCGCCugcgugcgguaCUCGGCGGCcgggccguugcgcuuGuacugcugaaaccUCGACGAGCCg -3'
miRNA:   3'- gCGCGG-----------GAGCUGUCG---------------C-------------AGCUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 14832 0.69 0.367517
Target:  5'- gGuCGCCCUCGggguugacGCGGUcaaguucaagcaucGUCGagGCGAGCCg -3'
miRNA:   3'- gC-GCGGGAGC--------UGUCG--------------CAGC--UGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 15003 0.71 0.272267
Target:  5'- uGcCGCCCUCGGCu-UGUCGcGCGGGUCg -3'
miRNA:   3'- gC-GCGGGAGCUGucGCAGC-UGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 15104 0.68 0.413517
Target:  5'- gGCGauuaCCUCGGCAGUG-CGguGCGGGUg -3'
miRNA:   3'- gCGCg---GGAGCUGUCGCaGC--UGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 15152 0.66 0.488228
Target:  5'- cCGCGUacaccuaCCUCGACGcGCGccgcgaggugaUCGACGAggagGCCc -3'
miRNA:   3'- -GCGCG-------GGAGCUGU-CGC-----------AGCUGCU----CGG- -5'
12810 5' -59.5 NC_003387.1 + 15422 0.71 0.259211
Target:  5'- gGCGCggUCGACGaccGCGcCGACGAGCg -3'
miRNA:   3'- gCGCGggAGCUGU---CGCaGCUGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 15501 0.72 0.217515
Target:  5'- uCGuCGCCCaCGGCGGCGUUuAUGAGCa -3'
miRNA:   3'- -GC-GCGGGaGCUGUCGCAGcUGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 15989 0.76 0.112571
Target:  5'- gGCGCUCgcaGACGGCGUCGAggcCGGGCa -3'
miRNA:   3'- gCGCGGGag-CUGUCGCAGCU---GCUCGg -5'
12810 5' -59.5 NC_003387.1 + 16039 0.71 0.259211
Target:  5'- aGCuuGCCCgCGgugaacGCGGCcagGUCGGCGAGCCg -3'
miRNA:   3'- gCG--CGGGaGC------UGUCG---CAGCUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 16092 0.67 0.479384
Target:  5'- gGCGCCgUCgGGCAuCG-CGGCG-GCCa -3'
miRNA:   3'- gCGCGGgAG-CUGUcGCaGCUGCuCGG- -5'
12810 5' -59.5 NC_003387.1 + 16739 0.66 0.499139
Target:  5'- uCGUGCCCUCGucguCGcCGcCGA-GGGCCu -3'
miRNA:   3'- -GCGCGGGAGCu---GUcGCaGCUgCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 17039 0.7 0.314594
Target:  5'- uGcCGCCCUCGcCgGGCGUCGuCGAGg- -3'
miRNA:   3'- gC-GCGGGAGCuG-UCGCAGCuGCUCgg -5'
12810 5' -59.5 NC_003387.1 + 17089 0.72 0.2231
Target:  5'- aGUGCCCgccCGGCcGCcUCGGCGGGCUc -3'
miRNA:   3'- gCGCGGGa--GCUGuCGcAGCUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 17160 0.7 0.314594
Target:  5'- gGCGCCgagguaguccaUCG-CGGCGUCGugcuccugGCGGGCCa -3'
miRNA:   3'- gCGCGGg----------AGCuGUCGCAGC--------UGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 17177 0.7 0.292129
Target:  5'- uGCGCCgcCUgGGCGGCGaCGGCGcgaaaguGGCCg -3'
miRNA:   3'- gCGCGG--GAgCUGUCGCaGCUGC-------UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.