miRNA display CGI


Results 81 - 100 of 243 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12810 5' -59.5 NC_003387.1 + 17347 0.74 0.163647
Target:  5'- aCGCauGCCaggCGACGGCGaucaggugCGGCGAGCCu -3'
miRNA:   3'- -GCG--CGGga-GCUGUCGCa-------GCUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 17574 0.7 0.292834
Target:  5'- -cCGCCCUCGcUGGUGUCGuGCG-GCCa -3'
miRNA:   3'- gcGCGGGAGCuGUCGCAGC-UGCuCGG- -5'
12810 5' -59.5 NC_003387.1 + 18036 0.68 0.394868
Target:  5'- gCGUGCCCgaGGCGGCGUuucagaacuucacCGGCGuuGCCc -3'
miRNA:   3'- -GCGCGGGagCUGUCGCA-------------GCUGCu-CGG- -5'
12810 5' -59.5 NC_003387.1 + 18182 0.69 0.361711
Target:  5'- aCGaCGUCgUCGAgCGG-GUCGACGGGCa -3'
miRNA:   3'- -GC-GCGGgAGCU-GUCgCAGCUGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 18202 0.67 0.450494
Target:  5'- gGUGCgCCUCGGCGaCG-CGACGA-CCg -3'
miRNA:   3'- gCGCG-GGAGCUGUcGCaGCUGCUcGG- -5'
12810 5' -59.5 NC_003387.1 + 18278 0.66 0.499139
Target:  5'- uCGcCGCacuaCUCGAcCAGCGcCGACccGGCCg -3'
miRNA:   3'- -GC-GCGg---GAGCU-GUCGCaGCUGc-UCGG- -5'
12810 5' -59.5 NC_003387.1 + 18319 0.66 0.489215
Target:  5'- gGCGCCCggCaACGGCGUggcCGuCGuGCCc -3'
miRNA:   3'- gCGCGGGa-GcUGUCGCA---GCuGCuCGG- -5'
12810 5' -59.5 NC_003387.1 + 18927 0.67 0.469651
Target:  5'- uGCGCCUcaUCG--GGUGUCGGCaccAGCCg -3'
miRNA:   3'- gCGCGGG--AGCugUCGCAGCUGc--UCGG- -5'
12810 5' -59.5 NC_003387.1 + 18975 0.71 0.272267
Target:  5'- gGCaCCC-CGGCgAGCaUCGACGAGCUg -3'
miRNA:   3'- gCGcGGGaGCUG-UCGcAGCUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 19394 0.66 0.489215
Target:  5'- --aGCaCgUUGuGCAGCGUCGuGCGGGCCu -3'
miRNA:   3'- gcgCG-GgAGC-UGUCGCAGC-UGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 19549 0.67 0.478406
Target:  5'- uCGCGCUCgUCGAgaaccugucgaguCGGC--UGGCGAGCCu -3'
miRNA:   3'- -GCGCGGG-AGCU-------------GUCGcaGCUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 19933 0.7 0.314594
Target:  5'- uGCGCCaggUCGACccGGCGguacgCGGCGGGUg -3'
miRNA:   3'- gCGCGGg--AGCUG--UCGCa----GCUGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 20082 0.66 0.489215
Target:  5'- aGCGUuauguCCUUGAggcucauaggguCAGCGcccccgCGGCGAGCCc -3'
miRNA:   3'- gCGCG-----GGAGCU------------GUCGCa-----GCUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 20156 0.67 0.450494
Target:  5'- aGCGCgaaCC-CGAgGGCGUCGA-GGGCg -3'
miRNA:   3'- gCGCG---GGaGCUgUCGCAGCUgCUCGg -5'
12810 5' -59.5 NC_003387.1 + 20450 0.7 0.321356
Target:  5'- uCGCGCCCccacgccUUGuCGGCcUCGGCGAcgGCCa -3'
miRNA:   3'- -GCGCGGG-------AGCuGUCGcAGCUGCU--CGG- -5'
12810 5' -59.5 NC_003387.1 + 20888 0.68 0.378471
Target:  5'- gGUGCCC-CGGCGGCGUCauugGAgGAuGCg -3'
miRNA:   3'- gCGCGGGaGCUGUCGCAG----CUgCU-CGg -5'
12810 5' -59.5 NC_003387.1 + 20984 0.66 0.519249
Target:  5'- cCGCGaaugCCgCGAUAGCucucGUCGGCGAcagcGCCg -3'
miRNA:   3'- -GCGCg---GGaGCUGUCG----CAGCUGCU----CGG- -5'
12810 5' -59.5 NC_003387.1 + 21644 0.66 0.529423
Target:  5'- aGCGUCagcucgUCGACcGCGgCGGCG-GCCg -3'
miRNA:   3'- gCGCGGg-----AGCUGuCGCaGCUGCuCGG- -5'
12810 5' -59.5 NC_003387.1 + 21687 0.7 0.322114
Target:  5'- cCGaCGCCCU-GGCcGCcUCGGCGAGCg -3'
miRNA:   3'- -GC-GCGGGAgCUGuCGcAGCUGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 21751 0.66 0.53967
Target:  5'- gGCGCUCggCGuCAGCGccacCGACGcGCUg -3'
miRNA:   3'- gCGCGGGa-GCuGUCGCa---GCUGCuCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.