miRNA display CGI


Results 21 - 40 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12810 5' -59.5 NC_003387.1 + 48305 0.7 0.307207
Target:  5'- aCGCcuuGCCCagcuCGGCGUCGACGuucuGCCa -3'
miRNA:   3'- -GCG---CGGGagcuGUCGCAGCUGCu---CGG- -5'
12810 5' -59.5 NC_003387.1 + 48196 0.68 0.422586
Target:  5'- gGUGCCCgcacCGGCGGCGgCGGcCGAGgUg -3'
miRNA:   3'- gCGCGGGa---GCUGUCGCaGCU-GCUCgG- -5'
12810 5' -59.5 NC_003387.1 + 48134 0.71 0.24667
Target:  5'- gCGCGCgUUCGAgcuuguCGGCcUCGGCGAGCa -3'
miRNA:   3'- -GCGCGgGAGCU------GUCGcAGCUGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 48070 0.73 0.18169
Target:  5'- cCGCGCCC-CGA-AGCGccUCGACGGGUg -3'
miRNA:   3'- -GCGCGGGaGCUgUCGC--AGCUGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 48046 0.66 0.519249
Target:  5'- --aGCaCCUCGucuugcuugGCGGCGUCGGCcgcuuggcgccGGGCCu -3'
miRNA:   3'- gcgCG-GGAGC---------UGUCGCAGCUG-----------CUCGG- -5'
12810 5' -59.5 NC_003387.1 + 47703 0.7 0.307207
Target:  5'- gCGcCGCCCUCGugAGCcugccgugcugGUCGAaccaCGcGGCCa -3'
miRNA:   3'- -GC-GCGGGAGCugUCG-----------CAGCU----GC-UCGG- -5'
12810 5' -59.5 NC_003387.1 + 47593 0.67 0.479384
Target:  5'- aGCGcCCCUCGuC-GCGUgCGGCGAucaGCUc -3'
miRNA:   3'- gCGC-GGGAGCuGuCGCA-GCUGCU---CGG- -5'
12810 5' -59.5 NC_003387.1 + 47293 0.72 0.217515
Target:  5'- gGCGCCCUCGGuCgAGUuguccUCGGCGGGCUu -3'
miRNA:   3'- gCGCGGGAGCU-G-UCGc----AGCUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 47187 0.7 0.302839
Target:  5'- gGuCGCCCUCGGggcucagguggccgcCGGUGUCGGCauugugguGGGCCu -3'
miRNA:   3'- gC-GCGGGAGCU---------------GUCGCAGCUG--------CUCGG- -5'
12810 5' -59.5 NC_003387.1 + 47154 0.66 0.489215
Target:  5'- -uUGCCagCUCGGCGGCGUCagccuUGAGCUg -3'
miRNA:   3'- gcGCGG--GAGCUGUCGCAGcu---GCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 46174 0.7 0.322114
Target:  5'- uGCGCCgugucccggCUCGcauguaucuGCAGCG-CGACGGGCg -3'
miRNA:   3'- gCGCGG---------GAGC---------UGUCGCaGCUGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 46063 0.66 0.53967
Target:  5'- aGCGCaCCgCGcuugAGCGggucgaCGACGAGCCc -3'
miRNA:   3'- gCGCG-GGaGCug--UCGCa-----GCUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 46040 0.66 0.540698
Target:  5'- cCGCGagcugucggcaaucaCCUCGAUcgccGCGUCGGCGucCCa -3'
miRNA:   3'- -GCGCg--------------GGAGCUGu---CGCAGCUGCucGG- -5'
12810 5' -59.5 NC_003387.1 + 45755 0.68 0.413517
Target:  5'- uCGuCGCCCUCGACgAGgG-CGGCcAGCa -3'
miRNA:   3'- -GC-GCGGGAGCUG-UCgCaGCUGcUCGg -5'
12810 5' -59.5 NC_003387.1 + 45439 0.67 0.431774
Target:  5'- uGCGCaagCUCGcCGggccuGCGcCGugGAGCCa -3'
miRNA:   3'- gCGCGg--GAGCuGU-----CGCaGCugCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 44867 0.75 0.13233
Target:  5'- cCGUaGCCgUCGGgGGCGUCGGCGAuuccGCCu -3'
miRNA:   3'- -GCG-CGGgAGCUgUCGCAGCUGCU----CGG- -5'
12810 5' -59.5 NC_003387.1 + 44776 0.68 0.395743
Target:  5'- aGCGgcccgaCCUCGACAagcuggcccgcGCGauccUCGACGGGCUg -3'
miRNA:   3'- gCGCg-----GGAGCUGU-----------CGC----AGCUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 44645 0.72 0.212049
Target:  5'- gGCGCCgacCGGCAGCGgguuagCG-CGGGCCg -3'
miRNA:   3'- gCGCGGga-GCUGUCGCa-----GCuGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 44589 0.67 0.460019
Target:  5'- uCGCuGCCCggcCGggacaGCAGCG-CGuACGAGCUg -3'
miRNA:   3'- -GCG-CGGGa--GC-----UGUCGCaGC-UGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 44363 0.66 0.519249
Target:  5'- gGUGCCCaUGACaaccgacgacccGGUgGUCGACGAGgCg -3'
miRNA:   3'- gCGCGGGaGCUG------------UCG-CAGCUGCUCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.