miRNA display CGI


Results 41 - 60 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12810 5' -59.5 NC_003387.1 + 43803 0.68 0.408134
Target:  5'- cCGCuUCCUCGACgagugcugcacgaucGGCGagGGCGAGgCCg -3'
miRNA:   3'- -GCGcGGGAGCUG---------------UCGCagCUGCUC-GG- -5'
12810 5' -59.5 NC_003387.1 + 43708 0.74 0.155243
Target:  5'- gGCGCCCgccaggugcUCGACGGCGgcaugCGG-GAGCCc -3'
miRNA:   3'- gCGCGGG---------AGCUGUCGCa----GCUgCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 43409 0.67 0.467716
Target:  5'- uGUGCUCggaggucaacgcCGACAGCaaguUCGACGAGgCCa -3'
miRNA:   3'- gCGCGGGa-----------GCUGUCGc---AGCUGCUC-GG- -5'
12810 5' -59.5 NC_003387.1 + 42964 0.67 0.441078
Target:  5'- uGcCGCCC-CGGCAuGCG-CG-UGAGCCu -3'
miRNA:   3'- gC-GCGGGaGCUGU-CGCaGCuGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 42771 0.69 0.356785
Target:  5'- gCGCGCCCUCGGugcgcugccaguuguUgauccguagGGCGUCGaucacguguGCGAGCa -3'
miRNA:   3'- -GCGCGGGAGCU---------------G---------UCGCAGC---------UGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 42687 0.76 0.11883
Target:  5'- cCGCGCCCUCGGCGcGCuUCGGCucGUCg -3'
miRNA:   3'- -GCGCGGGAGCUGU-CGcAGCUGcuCGG- -5'
12810 5' -59.5 NC_003387.1 + 42481 0.67 0.479384
Target:  5'- cCGCGCUCggcgCGGCucaucGCGUCG-CGGauGCCc -3'
miRNA:   3'- -GCGCGGGa---GCUGu----CGCAGCuGCU--CGG- -5'
12810 5' -59.5 NC_003387.1 + 42300 0.68 0.387044
Target:  5'- -uCGCCC-CGACgaucaaggcguGGCG-CGACGAGCa -3'
miRNA:   3'- gcGCGGGaGCUG-----------UCGCaGCUGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 42292 0.67 0.460019
Target:  5'- uCGaUGCCCgcCGACAGC--CG-CGAGCCg -3'
miRNA:   3'- -GC-GCGGGa-GCUGUCGcaGCuGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 42172 0.69 0.361711
Target:  5'- uGCGCCgagUCGAUcuGCGUCaGACG-GCCg -3'
miRNA:   3'- gCGCGGg--AGCUGu-CGCAG-CUGCuCGG- -5'
12810 5' -59.5 NC_003387.1 + 41855 0.69 0.337554
Target:  5'- uGCaGCCauuggaagaUCGGCAGaccgcgGUCGGCGAGCUg -3'
miRNA:   3'- gCG-CGGg--------AGCUGUCg-----CAGCUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 41807 0.67 0.479384
Target:  5'- gGCGCacgCCU-GGCAGaucaUCGACGAGCUg -3'
miRNA:   3'- gCGCG---GGAgCUGUCgc--AGCUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 41685 0.66 0.53967
Target:  5'- gGCGUCaaccCGACccGGCGUCG-CGGcGCCg -3'
miRNA:   3'- gCGCGGga--GCUG--UCGCAGCuGCU-CGG- -5'
12810 5' -59.5 NC_003387.1 + 41276 0.83 0.038115
Target:  5'- uGCGCCCccUCGACGGCGacgagcgaaaccUCGACGAGCg -3'
miRNA:   3'- gCGCGGG--AGCUGUCGC------------AGCUGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 41270 0.71 0.259211
Target:  5'- aGCGCCC-CGGCGGCGagcugcagCG-CGGGCa -3'
miRNA:   3'- gCGCGGGaGCUGUCGCa-------GCuGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 41142 0.67 0.478406
Target:  5'- gCGCGCCgaCGGCcgcugcgAGUGUCagGGCGAGUg -3'
miRNA:   3'- -GCGCGGgaGCUG-------UCGCAG--CUGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 41016 0.67 0.450494
Target:  5'- -aCGCCCaaaucgCGACAGCGagccCGACGA-CCg -3'
miRNA:   3'- gcGCGGGa-----GCUGUCGCa---GCUGCUcGG- -5'
12810 5' -59.5 NC_003387.1 + 40998 0.74 0.172458
Target:  5'- gGUGCCUgau-CGGCGUCGACG-GCCg -3'
miRNA:   3'- gCGCGGGagcuGUCGCAGCUGCuCGG- -5'
12810 5' -59.5 NC_003387.1 + 40743 0.8 0.064947
Target:  5'- gCGCGCCCUCGACaaGGCGggCGuCGAGUa -3'
miRNA:   3'- -GCGCGGGAGCUG--UCGCa-GCuGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 40383 0.67 0.450494
Target:  5'- aGgG-CCUCGACGuCGgCGGCGAGCUg -3'
miRNA:   3'- gCgCgGGAGCUGUcGCaGCUGCUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.