miRNA display CGI


Results 61 - 80 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12810 5' -59.5 NC_003387.1 + 40151 0.7 0.299954
Target:  5'- gGCGacaCCgUCGGCGGCccgaucGUCGuCGAGCCc -3'
miRNA:   3'- gCGCg--GG-AGCUGUCG------CAGCuGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 40128 0.68 0.419853
Target:  5'- aGCGCCCggccCGACgggugaucgggguaAGCGUCcuGCGAccGCCa -3'
miRNA:   3'- gCGCGGGa---GCUG--------------UCGCAGc-UGCU--CGG- -5'
12810 5' -59.5 NC_003387.1 + 39780 0.68 0.387044
Target:  5'- aGaCGCCgaCGugGcacugccgaGCGcCGACGAGCCa -3'
miRNA:   3'- gC-GCGGgaGCugU---------CGCaGCUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 39714 0.67 0.431774
Target:  5'- gGCGCUgUCGACcuuGCc-CGACGAcGCCu -3'
miRNA:   3'- gCGCGGgAGCUGu--CGcaGCUGCU-CGG- -5'
12810 5' -59.5 NC_003387.1 + 39670 0.68 0.387044
Target:  5'- uGCuuGUCCUCGAUAGCcuuGUCGGCGuuGCg -3'
miRNA:   3'- gCG--CGGGAGCUGUCG---CAGCUGCu-CGg -5'
12810 5' -59.5 NC_003387.1 + 39535 0.72 0.240591
Target:  5'- cCGCGCuUCUCGAUcGCGUCGGCcaGGUCg -3'
miRNA:   3'- -GCGCG-GGAGCUGuCGCAGCUGc-UCGG- -5'
12810 5' -59.5 NC_003387.1 + 39066 0.74 0.155243
Target:  5'- gGCGCCCUCGGCGaccgagccGcCGcCGACGguGGCCg -3'
miRNA:   3'- gCGCGGGAGCUGU--------C-GCaGCUGC--UCGG- -5'
12810 5' -59.5 NC_003387.1 + 38788 0.69 0.361711
Target:  5'- aCGCuGUacagCCUCGGCGGCGUC-AUGGuGCCg -3'
miRNA:   3'- -GCG-CG----GGAGCUGUCGCAGcUGCU-CGG- -5'
12810 5' -59.5 NC_003387.1 + 38235 0.68 0.404569
Target:  5'- gCGCGCCCUUagUGGCcUCGcCGAGCa -3'
miRNA:   3'- -GCGCGGGAGcuGUCGcAGCuGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 38163 0.67 0.460019
Target:  5'- aCG-GCCa--GGCGGCGUCGACc-GCCa -3'
miRNA:   3'- -GCgCGGgagCUGUCGCAGCUGcuCGG- -5'
12810 5' -59.5 NC_003387.1 + 38046 0.68 0.395743
Target:  5'- gGCGCCC-CGAUcgGGCGgUGGCuGAGCg -3'
miRNA:   3'- gCGCGGGaGCUG--UCGCaGCUG-CUCGg -5'
12810 5' -59.5 NC_003387.1 + 37916 0.74 0.159395
Target:  5'- gCGCGCCgUgGGuCGGUGUCGAccaucauguaCGAGCCg -3'
miRNA:   3'- -GCGCGGgAgCU-GUCGCAGCU----------GCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 37855 0.71 0.272267
Target:  5'- uGCGCCCggCGGCucGCcUCGACGAuGCUu -3'
miRNA:   3'- gCGCGGGa-GCUGu-CGcAGCUGCU-CGG- -5'
12810 5' -59.5 NC_003387.1 + 37788 0.67 0.444831
Target:  5'- gCGCGCCUgggcgcagcacccgCGgucgcaGCAGCGcgCGAuCGGGCCg -3'
miRNA:   3'- -GCGCGGGa-------------GC------UGUCGCa-GCU-GCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 37293 0.73 0.190863
Target:  5'- gCGCGCUCgucggcgcggucgUCGACcGCGcCGACGuGCCg -3'
miRNA:   3'- -GCGCGGG-------------AGCUGuCGCaGCUGCuCGG- -5'
12810 5' -59.5 NC_003387.1 + 37227 0.68 0.387044
Target:  5'- -aCGCCgC-CGugGGCGacgauuUCGACGAGCUg -3'
miRNA:   3'- gcGCGG-GaGCugUCGC------AGCUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 37105 0.85 0.027135
Target:  5'- gCGCGCCCUCGACGugcucGaCGUCGGCcGGGCCg -3'
miRNA:   3'- -GCGCGGGAGCUGU-----C-GCAGCUG-CUCGG- -5'
12810 5' -59.5 NC_003387.1 + 36725 0.67 0.431774
Target:  5'- aGCuGCCCggccUCGACGcCGUCuGCGAGCg -3'
miRNA:   3'- gCG-CGGG----AGCUGUcGCAGcUGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 36339 0.71 0.24667
Target:  5'- gGuCGUCgUCGACuGCGaaaCGACGGGCCu -3'
miRNA:   3'- gC-GCGGgAGCUGuCGCa--GCUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 35979 0.78 0.083334
Target:  5'- --gGCCCUCGGCGGCGaCGACGAGg- -3'
miRNA:   3'- gcgCGGGAGCUGUCGCaGCUGCUCgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.