miRNA display CGI


Results 41 - 60 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12810 5' -59.5 NC_003387.1 + 2027 0.7 0.322114
Target:  5'- gGUGCCgC-CGACGGCcgccGUCGcCGAGCUg -3'
miRNA:   3'- gCGCGG-GaGCUGUCG----CAGCuGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 8194 0.71 0.272267
Target:  5'- gCGCGUuuUCGACAGCGaCGuCGuGCg -3'
miRNA:   3'- -GCGCGggAGCUGUCGCaGCuGCuCGg -5'
12810 5' -59.5 NC_003387.1 + 12899 0.8 0.064947
Target:  5'- aGCGgCCUCGACGGCGUgGGgGuGCCu -3'
miRNA:   3'- gCGCgGGAGCUGUCGCAgCUgCuCGG- -5'
12810 5' -59.5 NC_003387.1 + 46174 0.7 0.322114
Target:  5'- uGCGCCgugucccggCUCGcauguaucuGCAGCG-CGACGGGCg -3'
miRNA:   3'- gCGCGG---------GAGC---------UGUCGCaGCUGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 41276 0.83 0.038115
Target:  5'- uGCGCCCccUCGACGGCGacgagcgaaaccUCGACGAGCg -3'
miRNA:   3'- gCGCGGG--AGCUGUCGC------------AGCUGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 2710 0.68 0.404569
Target:  5'- uGUGCUCggCGAC-GCGggCGGCGGGCa -3'
miRNA:   3'- gCGCGGGa-GCUGuCGCa-GCUGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 8680 0.8 0.068091
Target:  5'- uGCGCCgUUCGGCAcgccgcugccgaccGaCGUCGACGAGCCg -3'
miRNA:   3'- gCGCGG-GAGCUGU--------------C-GCAGCUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 31056 0.68 0.395743
Target:  5'- gGCGCCgaUGGCaccGGCGaCGGCGAGUg -3'
miRNA:   3'- gCGCGGgaGCUG---UCGCaGCUGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 37227 0.68 0.387044
Target:  5'- -aCGCCgC-CGugGGCGacgauuUCGACGAGCUg -3'
miRNA:   3'- gcGCGG-GaGCugUCGC------AGCUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 30173 0.69 0.370026
Target:  5'- cCGCGCgaucgCCUCgGGCaaggAGCaGUCGcCGAGCCg -3'
miRNA:   3'- -GCGCG-----GGAG-CUG----UCG-CAGCuGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 27859 0.69 0.353527
Target:  5'- gGCGCCacgaUCGACaccGGCG-CGGuCGAGCa -3'
miRNA:   3'- gCGCGGg---AGCUG---UCGCaGCU-GCUCGg -5'
12810 5' -59.5 NC_003387.1 + 13675 0.69 0.343085
Target:  5'- gGCGCCgUCGACGcuaUGUCGGCGuucgucccgagcgcGGCCc -3'
miRNA:   3'- gCGCGGgAGCUGUc--GCAGCUGC--------------UCGG- -5'
12810 5' -59.5 NC_003387.1 + 1300 0.69 0.329768
Target:  5'- uCGaCGCCCU-GGCGGgcgaCGUCGACGAcGUCg -3'
miRNA:   3'- -GC-GCGGGAgCUGUC----GCAGCUGCU-CGG- -5'
12810 5' -59.5 NC_003387.1 + 17039 0.7 0.314594
Target:  5'- uGcCGCCCUCGcCgGGCGUCGuCGAGg- -3'
miRNA:   3'- gC-GCGGGAGCuG-UCGCAGCuGCUCgg -5'
12810 5' -59.5 NC_003387.1 + 40151 0.7 0.299954
Target:  5'- gGCGacaCCgUCGGCGGCccgaucGUCGuCGAGCCc -3'
miRNA:   3'- gCGCg--GG-AGCUGUCG------CAGCuGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 8013 0.7 0.287929
Target:  5'- uCGUGCCCUCugucggcccgcugguGGCcGCGcgagccuaucugcUCGACGAGCUg -3'
miRNA:   3'- -GCGCGGGAG---------------CUGuCGC-------------AGCUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 12272 0.71 0.272267
Target:  5'- cCGCGCCUggCGAcCGGCGgccggaUCaGCGGGCCg -3'
miRNA:   3'- -GCGCGGGa-GCU-GUCGC------AGcUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 49181 0.72 0.234637
Target:  5'- uCGCGCaggCGGCGGcCGUCGACguugcuGAGCCc -3'
miRNA:   3'- -GCGCGggaGCUGUC-GCAGCUG------CUCGG- -5'
12810 5' -59.5 NC_003387.1 + 37293 0.73 0.190863
Target:  5'- gCGCGCUCgucggcgcggucgUCGACcGCGcCGACGuGCCg -3'
miRNA:   3'- -GCGCGGG-------------AGCUGuCGCaGCUGCuCGG- -5'
12810 5' -59.5 NC_003387.1 + 10011 0.75 0.139599
Target:  5'- cCGCGgCCgggCGACGaCGaCGACGAGCCg -3'
miRNA:   3'- -GCGCgGGa--GCUGUcGCaGCUGCUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.