miRNA display CGI


Results 61 - 80 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12810 5' -59.5 NC_003387.1 + 1300 0.69 0.329768
Target:  5'- uCGaCGCCCU-GGCGGgcgaCGUCGACGAcGUCg -3'
miRNA:   3'- -GC-GCGGGAgCUGUC----GCAGCUGCU-CGG- -5'
12810 5' -59.5 NC_003387.1 + 25805 0.69 0.345474
Target:  5'- gGCGgCCUCGGUGGCGgccugcUCGGCG-GCCu -3'
miRNA:   3'- gCGCgGGAGCUGUCGC------AGCUGCuCGG- -5'
12810 5' -59.5 NC_003387.1 + 35979 0.78 0.083334
Target:  5'- --gGCCCUCGGCGGCGaCGACGAGg- -3'
miRNA:   3'- gcgCGGGAGCUGUCGCaGCUGCUCgg -5'
12810 5' -59.5 NC_003387.1 + 43708 0.74 0.155243
Target:  5'- gGCGCCCgccaggugcUCGACGGCGgcaugCGG-GAGCCc -3'
miRNA:   3'- gCGCGGG---------AGCUGUCGCa----GCUgCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 9339 0.73 0.191357
Target:  5'- uCGaCGUCgUCGAgcacCAGgaCGUCGACGAGCCg -3'
miRNA:   3'- -GC-GCGGgAGCU----GUC--GCAGCUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 29852 0.71 0.24667
Target:  5'- gGCGCCCcugucgauucgUCGGCGagggcgcuuucGUGUUGACGGGUCa -3'
miRNA:   3'- gCGCGGG-----------AGCUGU-----------CGCAGCUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 18975 0.71 0.272267
Target:  5'- gGCaCCC-CGGCgAGCaUCGACGAGCUg -3'
miRNA:   3'- gCGcGGGaGCUG-UCGcAGCUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 17177 0.7 0.292129
Target:  5'- uGCGCCgcCUgGGCGGCGaCGGCGcgaaaguGGCCg -3'
miRNA:   3'- gCGCGG--GAgCUGUCGCaGCUGC-------UCGG- -5'
12810 5' -59.5 NC_003387.1 + 47187 0.7 0.302839
Target:  5'- gGuCGCCCUCGGggcucagguggccgcCGGUGUCGGCauugugguGGGCCu -3'
miRNA:   3'- gC-GCGGGAGCU---------------GUCGCAGCUG--------CUCGG- -5'
12810 5' -59.5 NC_003387.1 + 21783 0.7 0.314594
Target:  5'- uCGCGCUCaaguugaccgCGGCGGCcagcUCGGCGAGCg -3'
miRNA:   3'- -GCGCGGGa---------GCUGUCGc---AGCUGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 26698 0.67 0.479384
Target:  5'- gCGCuGCUCgUCGACGcCGUCGugcgcggcGCGAGCUg -3'
miRNA:   3'- -GCG-CGGG-AGCUGUcGCAGC--------UGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 41807 0.67 0.479384
Target:  5'- gGCGCacgCCU-GGCAGaucaUCGACGAGCUg -3'
miRNA:   3'- gCGCG---GGAgCUGUCgc--AGCUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 51254 0.69 0.361711
Target:  5'- aCGCccugGCCCUCGACGaCcUCGACGAGg- -3'
miRNA:   3'- -GCG----CGGGAGCUGUcGcAGCUGCUCgg -5'
12810 5' -59.5 NC_003387.1 + 20888 0.68 0.378471
Target:  5'- gGUGCCC-CGGCGGCGUCauugGAgGAuGCg -3'
miRNA:   3'- gCGCGGGaGCUGUCGCAG----CUgCU-CGg -5'
12810 5' -59.5 NC_003387.1 + 31056 0.68 0.395743
Target:  5'- gGCGCCgaUGGCaccGGCGaCGGCGAGUg -3'
miRNA:   3'- gCGCGGgaGCUG---UCGCaGCUGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 2710 0.68 0.404569
Target:  5'- uGUGCUCggCGAC-GCGggCGGCGGGCa -3'
miRNA:   3'- gCGCGGGa-GCUGuCGCa-GCUGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 36725 0.67 0.431774
Target:  5'- aGCuGCCCggccUCGACGcCGUCuGCGAGCg -3'
miRNA:   3'- gCG-CGGG----AGCUGUcGCAGcUGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 34237 0.67 0.441078
Target:  5'- uGCagGCCCUCGG-GGCGcUCGACcGGCUg -3'
miRNA:   3'- gCG--CGGGAGCUgUCGC-AGCUGcUCGG- -5'
12810 5' -59.5 NC_003387.1 + 40383 0.67 0.450494
Target:  5'- aGgG-CCUCGACGuCGgCGGCGAGCUg -3'
miRNA:   3'- gCgCgGGAGCUGUcGCaGCUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 747 0.67 0.469651
Target:  5'- gGUGCgCgCGACguguGGCG-CGAUGGGCCu -3'
miRNA:   3'- gCGCGgGaGCUG----UCGCaGCUGCUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.