miRNA display CGI


Results 81 - 100 of 243 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12810 5' -59.5 NC_003387.1 + 32561 0.69 0.372546
Target:  5'- cCGCGCCCUCGACGcccucggguucGCGcugcucauccugacgUCGAuccugcuCGGGCUc -3'
miRNA:   3'- -GCGCGGGAGCUGU-----------CGC---------------AGCU-------GCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 42300 0.68 0.387044
Target:  5'- -uCGCCC-CGACgaucaaggcguGGCG-CGACGAGCa -3'
miRNA:   3'- gcGCGGGaGCUG-----------UCGCaGCUGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 38046 0.68 0.395743
Target:  5'- gGCGCCC-CGAUcgGGCGgUGGCuGAGCg -3'
miRNA:   3'- gCGCGGGaGCUG--UCGCaGCUG-CUCGg -5'
12810 5' -59.5 NC_003387.1 + 48196 0.68 0.422586
Target:  5'- gGUGCCCgcacCGGCGGCGgCGGcCGAGgUg -3'
miRNA:   3'- gCGCGGGa---GCUGUCGCaGCU-GCUCgG- -5'
12810 5' -59.5 NC_003387.1 + 45439 0.67 0.431774
Target:  5'- uGCGCaagCUCGcCGggccuGCGcCGugGAGCCa -3'
miRNA:   3'- gCGCGg--GAGCuGU-----CGCaGCugCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 40383 0.67 0.450494
Target:  5'- aGgG-CCUCGACGuCGgCGGCGAGCUg -3'
miRNA:   3'- gCgCgGGAGCUGUcGCaGCUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 747 0.67 0.469651
Target:  5'- gGUGCgCgCGACguguGGCG-CGAUGGGCCu -3'
miRNA:   3'- gCGCGgGaGCUG----UCGCaGCUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 21783 0.7 0.314594
Target:  5'- uCGCGCUCaaguugaccgCGGCGGCcagcUCGGCGAGCg -3'
miRNA:   3'- -GCGCGGGa---------GCUGUCGc---AGCUGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 47187 0.7 0.302839
Target:  5'- gGuCGCCCUCGGggcucagguggccgcCGGUGUCGGCauugugguGGGCCu -3'
miRNA:   3'- gC-GCGGGAGCU---------------GUCGCAGCUG--------CUCGG- -5'
12810 5' -59.5 NC_003387.1 + 17177 0.7 0.292129
Target:  5'- uGCGCCgcCUgGGCGGCGaCGGCGcgaaaguGGCCg -3'
miRNA:   3'- gCGCGG--GAgCUGUCGCaGCUGC-------UCGG- -5'
12810 5' -59.5 NC_003387.1 + 18278 0.66 0.499139
Target:  5'- uCGcCGCacuaCUCGAcCAGCGcCGACccGGCCg -3'
miRNA:   3'- -GC-GCGg---GAGCU-GUCGCaGCUGc-UCGG- -5'
12810 5' -59.5 NC_003387.1 + 23247 0.66 0.519249
Target:  5'- gGCGCCCUCGGgcacUGGCucuaUGACGuGCUg -3'
miRNA:   3'- gCGCGGGAGCU----GUCGca--GCUGCuCGG- -5'
12810 5' -59.5 NC_003387.1 + 20984 0.66 0.519249
Target:  5'- cCGCGaaugCCgCGAUAGCucucGUCGGCGAcagcGCCg -3'
miRNA:   3'- -GCGCg---GGaGCUGUCG----CAGCUGCU----CGG- -5'
12810 5' -59.5 NC_003387.1 + 51488 0.66 0.528402
Target:  5'- -aCGCCagacCGggcaggaGCAGC-UCGACGAGCCa -3'
miRNA:   3'- gcGCGGga--GC-------UGUCGcAGCUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 29490 0.66 0.529423
Target:  5'- aCG-GCCCgCGAgaugGGCGUCGACcGGCUg -3'
miRNA:   3'- -GCgCGGGaGCUg---UCGCAGCUGcUCGG- -5'
12810 5' -59.5 NC_003387.1 + 35979 0.78 0.083334
Target:  5'- --gGCCCUCGGCGGCGaCGACGAGg- -3'
miRNA:   3'- gcgCGGGAGCUGUCGCaGCUGCUCgg -5'
12810 5' -59.5 NC_003387.1 + 43708 0.74 0.155243
Target:  5'- gGCGCCCgccaggugcUCGACGGCGgcaugCGG-GAGCCc -3'
miRNA:   3'- gCGCGGG---------AGCUGUCGCa----GCUgCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 9339 0.73 0.191357
Target:  5'- uCGaCGUCgUCGAgcacCAGgaCGUCGACGAGCCg -3'
miRNA:   3'- -GC-GCGGgAGCU----GUC--GCAGCUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 29852 0.71 0.24667
Target:  5'- gGCGCCCcugucgauucgUCGGCGagggcgcuuucGUGUUGACGGGUCa -3'
miRNA:   3'- gCGCGGG-----------AGCUGU-----------CGCAGCUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 18975 0.71 0.272267
Target:  5'- gGCaCCC-CGGCgAGCaUCGACGAGCUg -3'
miRNA:   3'- gCGcGGGaGCUG-UCGcAGCUGCUCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.