miRNA display CGI


Results 101 - 120 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12810 5' -59.5 NC_003387.1 + 9339 0.73 0.191357
Target:  5'- uCGaCGUCgUCGAgcacCAGgaCGUCGACGAGCCg -3'
miRNA:   3'- -GC-GCGGgAGCU----GUC--GCAGCUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 21783 0.7 0.314594
Target:  5'- uCGCGCUCaaguugaccgCGGCGGCcagcUCGGCGAGCg -3'
miRNA:   3'- -GCGCGGGa---------GCUGUCGc---AGCUGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 49619 0.69 0.329768
Target:  5'- gGCgGCCC-CGAUuuacgAGCcgGUCGGCGAGCUu -3'
miRNA:   3'- gCG-CGGGaGCUG-----UCG--CAGCUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 24892 0.69 0.34388
Target:  5'- uGCGCCCUguccacCGACGGCaccggcaagugcguuGUgaccgccgcgaccgaCGGCGGGCCg -3'
miRNA:   3'- gCGCGGGA------GCUGUCG---------------CA---------------GCUGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 10168 0.73 0.200956
Target:  5'- gCGCGCCaaucucgCUCGccagcuCGGCGUCGgucauGCGGGCCg -3'
miRNA:   3'- -GCGCGG-------GAGCu-----GUCGCAGC-----UGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 31030 0.73 0.186468
Target:  5'- cCGCGCUCgccgaggCGGCcagGGCGUCGGCGAacacgugcucgGCCg -3'
miRNA:   3'- -GCGCGGGa------GCUG---UCGCAGCUGCU-----------CGG- -5'
12810 5' -59.5 NC_003387.1 + 52447 0.73 0.186468
Target:  5'- uCGUGCaCUCGAcCGGCG-CGGCGcAGCCa -3'
miRNA:   3'- -GCGCGgGAGCU-GUCGCaGCUGC-UCGG- -5'
12810 5' -59.5 NC_003387.1 + 7837 0.73 0.18169
Target:  5'- gCGCGCCCggCGGCuGCGUCaGCucGGCCa -3'
miRNA:   3'- -GCGCGGGa-GCUGuCGCAGcUGc-UCGG- -5'
12810 5' -59.5 NC_003387.1 + 35725 0.69 0.370026
Target:  5'- aGCGCCCgcu-CGGgGUCGAUGAcgcaGCCc -3'
miRNA:   3'- gCGCGGGagcuGUCgCAGCUGCU----CGG- -5'
12810 5' -59.5 NC_003387.1 + 34109 0.74 0.168001
Target:  5'- gGCGgCagaUCGGCGGCGUCGACGucGCg -3'
miRNA:   3'- gCGCgGg--AGCUGUCGCAGCUGCu-CGg -5'
12810 5' -59.5 NC_003387.1 + 6143 0.74 0.168001
Target:  5'- gGCGCCaCU-GugAGgGUCGGCGuAGCCg -3'
miRNA:   3'- gCGCGG-GAgCugUCgCAGCUGC-UCGG- -5'
12810 5' -59.5 NC_003387.1 + 13616 0.67 0.460019
Target:  5'- uCGUGCaCCUCGAUGaaGUaGACGAGCg -3'
miRNA:   3'- -GCGCG-GGAGCUGUcgCAgCUGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 38163 0.67 0.460019
Target:  5'- aCG-GCCa--GGCGGCGUCGACc-GCCa -3'
miRNA:   3'- -GCgCGGgagCUGUCGCAGCUGcuCGG- -5'
12810 5' -59.5 NC_003387.1 + 42292 0.67 0.460019
Target:  5'- uCGaUGCCCgcCGACAGC--CG-CGAGCCg -3'
miRNA:   3'- -GC-GCGGGa-GCUGUCGcaGCuGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 1456 0.68 0.378471
Target:  5'- uCGuCGUCCUCGucgaGGuCGUCGA-GGGCCa -3'
miRNA:   3'- -GC-GCGGGAGCug--UC-GCAGCUgCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 12798 0.68 0.378471
Target:  5'- uGCGCgCCUCGcaacgaccGCAGuCGUCGcCGGGgCa -3'
miRNA:   3'- gCGCG-GGAGC--------UGUC-GCAGCuGCUCgG- -5'
12810 5' -59.5 NC_003387.1 + 6975 0.68 0.378471
Target:  5'- gCGCGCCCUCGGCcacuugugcaGGCGcCGcagaaugucGCGcAGCa -3'
miRNA:   3'- -GCGCGGGAGCUG----------UCGCaGC---------UGC-UCGg -5'
12810 5' -59.5 NC_003387.1 + 49219 0.69 0.370026
Target:  5'- gGCGCCgguucgUUCGACAGCaguuuGUCGACaAGCg -3'
miRNA:   3'- gCGCGG------GAGCUGUCG-----CAGCUGcUCGg -5'
12810 5' -59.5 NC_003387.1 + 6365 0.69 0.370026
Target:  5'- uCGCGCuuggCCUCGGCcGCGggCGACGccuugcgugggcGGCCc -3'
miRNA:   3'- -GCGCG----GGAGCUGuCGCa-GCUGC------------UCGG- -5'
12810 5' -59.5 NC_003387.1 + 20082 0.66 0.489215
Target:  5'- aGCGUuauguCCUUGAggcucauaggguCAGCGcccccgCGGCGAGCCc -3'
miRNA:   3'- gCGCG-----GGAGCU------------GUCGCa-----GCUGCUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.