miRNA display CGI


Results 81 - 100 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12810 5' -59.5 NC_003387.1 + 15104 0.68 0.413517
Target:  5'- gGCGauuaCCUCGGCAGUG-CGguGCGGGUg -3'
miRNA:   3'- gCGCg---GGAGCUGUCGCaGC--UGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 49428 0.68 0.404569
Target:  5'- gGCGCCCgagUCGGCGGCcguGUCGGgGucGUCg -3'
miRNA:   3'- gCGCGGG---AGCUGUCG---CAGCUgCu-CGG- -5'
12810 5' -59.5 NC_003387.1 + 38235 0.68 0.404569
Target:  5'- gCGCGCCCUUagUGGCcUCGcCGAGCa -3'
miRNA:   3'- -GCGCGGGAGcuGUCGcAGCuGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 3162 0.68 0.404569
Target:  5'- gGCGCaCCUCGGCgaGGCcguaaUCGGggUGAGCCu -3'
miRNA:   3'- gCGCG-GGAGCUG--UCGc----AGCU--GCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 33162 0.68 0.395743
Target:  5'- uCGCcaGCCgaCUCGACAGguucUCGACGAGCg -3'
miRNA:   3'- -GCG--CGG--GAGCUGUCgc--AGCUGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 52503 0.68 0.395743
Target:  5'- gCGCGCaugucaacCCUCGACgaacgcGGCaauGUCG-CGGGCCg -3'
miRNA:   3'- -GCGCG--------GGAGCUG------UCG---CAGCuGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 50819 0.68 0.395743
Target:  5'- gGCGCCagCGAgGGCGUCauucagcGCGGGCUg -3'
miRNA:   3'- gCGCGGgaGCUgUCGCAGc------UGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 39714 0.67 0.431774
Target:  5'- gGCGCUgUCGACcuuGCc-CGACGAcGCCu -3'
miRNA:   3'- gCGCGGgAGCUGu--CGcaGCUGCU-CGG- -5'
12810 5' -59.5 NC_003387.1 + 48731 0.67 0.435482
Target:  5'- uGCGCCg-CGACGaguccaugaccgcgcGgGUCGcCGAGCCu -3'
miRNA:   3'- gCGCGGgaGCUGU---------------CgCAGCuGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 27141 0.67 0.441078
Target:  5'- cCGUGCCCgc--CGGgGUCGGCGccGCCg -3'
miRNA:   3'- -GCGCGGGagcuGUCgCAGCUGCu-CGG- -5'
12810 5' -59.5 NC_003387.1 + 44589 0.67 0.460019
Target:  5'- uCGCuGCCCggcCGggacaGCAGCG-CGuACGAGCUg -3'
miRNA:   3'- -GCG-CGGGa--GC-----UGUCGCaGC-UGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 42292 0.67 0.460019
Target:  5'- uCGaUGCCCgcCGACAGC--CG-CGAGCCg -3'
miRNA:   3'- -GC-GCGGGa-GCUGUCGcaGCuGCUCGG- -5'
12810 5' -59.5 NC_003387.1 + 38163 0.67 0.460019
Target:  5'- aCG-GCCa--GGCGGCGUCGACc-GCCa -3'
miRNA:   3'- -GCgCGGgagCUGUCGCAGCUGcuCGG- -5'
12810 5' -59.5 NC_003387.1 + 13616 0.67 0.460019
Target:  5'- uCGUGCaCCUCGAUGaaGUaGACGAGCg -3'
miRNA:   3'- -GCGCG-GGAGCUGUcgCAgCUGCUCGg -5'
12810 5' -59.5 NC_003387.1 + 9997 0.67 0.460019
Target:  5'- -aCGCCCUgaCGAgCAG-GUCGGCGuuGCCg -3'
miRNA:   3'- gcGCGGGA--GCU-GUCgCAGCUGCu-CGG- -5'
12810 5' -59.5 NC_003387.1 + 50450 0.67 0.460019
Target:  5'- gGCGCCCUCGggcaccucGgGGCGcCcACGcAGCCc -3'
miRNA:   3'- gCGCGGGAGC--------UgUCGCaGcUGC-UCGG- -5'
12810 5' -59.5 NC_003387.1 + 11701 0.67 0.450494
Target:  5'- uGuCGCCgUCGAC-GCaGUCGACccGGCCg -3'
miRNA:   3'- gC-GCGGgAGCUGuCG-CAGCUGc-UCGG- -5'
12810 5' -59.5 NC_003387.1 + 41016 0.67 0.450494
Target:  5'- -aCGCCCaaaucgCGACAGCGagccCGACGA-CCg -3'
miRNA:   3'- gcGCGGGa-----GCUGUCGCa---GCUGCUcGG- -5'
12810 5' -59.5 NC_003387.1 + 20156 0.67 0.450494
Target:  5'- aGCGCgaaCC-CGAgGGCGUCGA-GGGCg -3'
miRNA:   3'- gCGCG---GGaGCUgUCGCAGCUgCUCGg -5'
12810 5' -59.5 NC_003387.1 + 30191 0.68 0.394868
Target:  5'- aGCcaGCCCUCGGCcugggccAGgGUCGcgGCGGGCa -3'
miRNA:   3'- gCG--CGGGAGCUG-------UCgCAGC--UGCUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.