miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12811 3' -53.7 NC_003387.1 + 50291 0.66 0.813135
Target:  5'- aGGcCGUCGA-GAACGGCUggGCCgucaACGCGa -3'
miRNA:   3'- -CC-GCAGUUcCUUGCUGA--CGG----UGUGCa -5'
12811 3' -53.7 NC_003387.1 + 39384 0.66 0.813135
Target:  5'- aGGUGUaCGAGGugcucguGCGcCUGgCGCGCGa -3'
miRNA:   3'- -CCGCA-GUUCCu------UGCuGACgGUGUGCa -5'
12811 3' -53.7 NC_003387.1 + 43794 0.66 0.809332
Target:  5'- cGGCGUCGcccgcuuccucGACGAgUGCUGCACGa -3'
miRNA:   3'- -CCGCAGUucc--------UUGCUgACGGUGUGCa -5'
12811 3' -53.7 NC_003387.1 + 50830 0.66 0.803571
Target:  5'- gGGCGUCAuucagcgcGGGcUGAUcGCCAUGCGUc -3'
miRNA:   3'- -CCGCAGUu-------CCUuGCUGaCGGUGUGCA- -5'
12811 3' -53.7 NC_003387.1 + 15029 0.66 0.803571
Target:  5'- cGGCGUCGuccgacaggcccAGGAACGAUgacgaUGCacuCAUGCGg -3'
miRNA:   3'- -CCGCAGU------------UCCUUGCUG-----ACG---GUGUGCa -5'
12811 3' -53.7 NC_003387.1 + 13004 0.66 0.803571
Target:  5'- aGGCGUCGucGGGcaagguCGACagcGCCcGCACGUc -3'
miRNA:   3'- -CCGCAGU--UCCuu----GCUGa--CGG-UGUGCA- -5'
12811 3' -53.7 NC_003387.1 + 37656 0.66 0.803571
Target:  5'- -uCGUCGAGGAGCua--GCCGCAUGa -3'
miRNA:   3'- ccGCAGUUCCUUGcugaCGGUGUGCa -5'
12811 3' -53.7 NC_003387.1 + 35334 0.66 0.794806
Target:  5'- gGGCGggCGAGGAGauugacgccgagacaGGCUcGCCGCACc- -3'
miRNA:   3'- -CCGCa-GUUCCUUg--------------CUGA-CGGUGUGca -5'
12811 3' -53.7 NC_003387.1 + 38079 0.66 0.793823
Target:  5'- cGCGUCAcuGugcGCGGCgGCCugACGg -3'
miRNA:   3'- cCGCAGUucCu--UGCUGaCGGugUGCa -5'
12811 3' -53.7 NC_003387.1 + 42452 0.66 0.793823
Target:  5'- aGGUGUCGAacuucGGGGCGACcuugaGCC-CGCGc -3'
miRNA:   3'- -CCGCAGUU-----CCUUGCUGa----CGGuGUGCa -5'
12811 3' -53.7 NC_003387.1 + 35111 0.66 0.792839
Target:  5'- cGGCucGUCGAGGAcaACGucaugccgccuaaGCcgugGCCGCACGa -3'
miRNA:   3'- -CCG--CAGUUCCU--UGC-------------UGa---CGGUGUGCa -5'
12811 3' -53.7 NC_003387.1 + 42744 0.66 0.783904
Target:  5'- gGGCGUgCucGGAuCGGCUG-CGCugGUg -3'
miRNA:   3'- -CCGCA-GuuCCUuGCUGACgGUGugCA- -5'
12811 3' -53.7 NC_003387.1 + 19163 0.66 0.783904
Target:  5'- cGCuGUCGAGGGcGCGGC--CCGCACGg -3'
miRNA:   3'- cCG-CAGUUCCU-UGCUGacGGUGUGCa -5'
12811 3' -53.7 NC_003387.1 + 11268 0.66 0.783904
Target:  5'- gGGCaGUCAGGGcGGCGuCaggGCCGCGCc- -3'
miRNA:   3'- -CCG-CAGUUCC-UUGCuGa--CGGUGUGca -5'
12811 3' -53.7 NC_003387.1 + 5509 0.66 0.773824
Target:  5'- aGGUGaUCGAGcAGCGGCUcGCC-CGCGa -3'
miRNA:   3'- -CCGC-AGUUCcUUGCUGA-CGGuGUGCa -5'
12811 3' -53.7 NC_003387.1 + 31023 0.67 0.763594
Target:  5'- aGCGUgCGccGGGGCGGCgGCCAgCACGg -3'
miRNA:   3'- cCGCA-GUu-CCUUGCUGaCGGU-GUGCa -5'
12811 3' -53.7 NC_003387.1 + 41162 0.67 0.763594
Target:  5'- aGUGUCAGGGcgaguGCGGCcgGUCGCACc- -3'
miRNA:   3'- cCGCAGUUCCu----UGCUGa-CGGUGUGca -5'
12811 3' -53.7 NC_003387.1 + 44587 0.67 0.763594
Target:  5'- aGGCGauccUCAAGGAgucgaGCGACgccgucggGCCgugGCGCGa -3'
miRNA:   3'- -CCGC----AGUUCCU-----UGCUGa-------CGG---UGUGCa -5'
12811 3' -53.7 NC_003387.1 + 41080 0.67 0.760498
Target:  5'- cGCGaUCGAGGGGCGaucgugagccgcgaGCUGCUggcgcuGCACGa -3'
miRNA:   3'- cCGC-AGUUCCUUGC--------------UGACGG------UGUGCa -5'
12811 3' -53.7 NC_003387.1 + 34648 0.67 0.753227
Target:  5'- -aCGUC-AGGAuCGGgUGCCGCugGg -3'
miRNA:   3'- ccGCAGuUCCUuGCUgACGGUGugCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.