miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12811 3' -53.7 NC_003387.1 + 34648 0.67 0.753227
Target:  5'- -aCGUC-AGGAuCGGgUGCCGCugGg -3'
miRNA:   3'- ccGCAGuUCCUuGCUgACGGUGugCa -5'
12811 3' -53.7 NC_003387.1 + 5191 0.67 0.742734
Target:  5'- gGGCaUCAAGGccCGGCUGUgGCGCc- -3'
miRNA:   3'- -CCGcAGUUCCuuGCUGACGgUGUGca -5'
12811 3' -53.7 NC_003387.1 + 7052 0.67 0.732127
Target:  5'- aGGaCGUCAAGcGGGCG-CUGCgGCGgGa -3'
miRNA:   3'- -CC-GCAGUUC-CUUGCuGACGgUGUgCa -5'
12811 3' -53.7 NC_003387.1 + 52201 0.67 0.721418
Target:  5'- aGGUGUCucGGGAucuucaaccGCGGucGCCACGCGg -3'
miRNA:   3'- -CCGCAGu-UCCU---------UGCUgaCGGUGUGCa -5'
12811 3' -53.7 NC_003387.1 + 16193 0.67 0.710619
Target:  5'- cGGCGUCGgugcugucGGGGcucagccuGCG-CUGCCAUAUGc -3'
miRNA:   3'- -CCGCAGU--------UCCU--------UGCuGACGGUGUGCa -5'
12811 3' -53.7 NC_003387.1 + 580 0.68 0.699741
Target:  5'- uGCGUCAcgcgGGGuGCGAgUaGCCAUGCGg -3'
miRNA:   3'- cCGCAGU----UCCuUGCUgA-CGGUGUGCa -5'
12811 3' -53.7 NC_003387.1 + 34822 0.68 0.688796
Target:  5'- gGGCGUCGAGaauguucguCGACgGCcCGCGCGg -3'
miRNA:   3'- -CCGCAGUUCcuu------GCUGaCG-GUGUGCa -5'
12811 3' -53.7 NC_003387.1 + 35885 0.68 0.688796
Target:  5'- aGCGUCAAGGGGCacgucGAcCUGCUGCgguACGUc -3'
miRNA:   3'- cCGCAGUUCCUUG-----CU-GACGGUG---UGCA- -5'
12811 3' -53.7 NC_003387.1 + 24687 0.68 0.677795
Target:  5'- uGGuCGUCAgcucgccgAGGAuCGGCuUGCCGCGCu- -3'
miRNA:   3'- -CC-GCAGU--------UCCUuGCUG-ACGGUGUGca -5'
12811 3' -53.7 NC_003387.1 + 41008 0.68 0.677795
Target:  5'- cGGCGUCGAcggccGGGuCGACUGCguCgACGg -3'
miRNA:   3'- -CCGCAGUU-----CCUuGCUGACGguG-UGCa -5'
12811 3' -53.7 NC_003387.1 + 7332 0.68 0.677795
Target:  5'- uGCGcUCAAGcAACGGCUGCgGC-CGUa -3'
miRNA:   3'- cCGC-AGUUCcUUGCUGACGgUGuGCA- -5'
12811 3' -53.7 NC_003387.1 + 3240 0.68 0.677795
Target:  5'- cGGCGagUCAuGGGAGCaACUGCUGCGCc- -3'
miRNA:   3'- -CCGC--AGU-UCCUUGcUGACGGUGUGca -5'
12811 3' -53.7 NC_003387.1 + 26030 0.68 0.666751
Target:  5'- cGGCGUCGAcGAGCaGCgcgaGCUGCACGa -3'
miRNA:   3'- -CCGCAGUUcCUUGcUGa---CGGUGUGCa -5'
12811 3' -53.7 NC_003387.1 + 9212 0.68 0.665644
Target:  5'- aGGUGUgCGAcGGGACGAaaucaaagaagucUUGCCGCAUGa -3'
miRNA:   3'- -CCGCA-GUU-CCUUGCU-------------GACGGUGUGCa -5'
12811 3' -53.7 NC_003387.1 + 29719 0.68 0.655673
Target:  5'- cGGCGcCcAGGccGACGACggcaGCUACGCGg -3'
miRNA:   3'- -CCGCaGuUCC--UUGCUGa---CGGUGUGCa -5'
12811 3' -53.7 NC_003387.1 + 15466 0.68 0.655673
Target:  5'- cGCGgCGAGGAugGuCUGC-GCACGg -3'
miRNA:   3'- cCGCaGUUCCUugCuGACGgUGUGCa -5'
12811 3' -53.7 NC_003387.1 + 3624 0.69 0.644573
Target:  5'- cGCGUCGAGGugcuCGACUucguacGCCuGCGCGc -3'
miRNA:   3'- cCGCAGUUCCuu--GCUGA------CGG-UGUGCa -5'
12811 3' -53.7 NC_003387.1 + 32289 0.69 0.633461
Target:  5'- gGGCG-CGAGGAGCaccGGCgGCUGCACa- -3'
miRNA:   3'- -CCGCaGUUCCUUG---CUGaCGGUGUGca -5'
12811 3' -53.7 NC_003387.1 + 22485 0.69 0.622349
Target:  5'- cGGCGUCGuaccGGGcGACGGCcucgGCgGCGCGc -3'
miRNA:   3'- -CCGCAGU----UCC-UUGCUGa---CGgUGUGCa -5'
12811 3' -53.7 NC_003387.1 + 21636 0.7 0.589101
Target:  5'- aGGCGUCGAGcgucagcucgucGAccGCGGCggcgGCCgaGCACGUg -3'
miRNA:   3'- -CCGCAGUUC------------CU--UGCUGa---CGG--UGUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.