miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12811 3' -53.7 NC_003387.1 + 32494 0.76 0.279777
Target:  5'- cGGCGcCGuGGugcGACGACUGCCGCuGCGUg -3'
miRNA:   3'- -CCGCaGUuCC---UUGCUGACGGUG-UGCA- -5'
12811 3' -53.7 NC_003387.1 + 31023 0.67 0.763594
Target:  5'- aGCGUgCGccGGGGCGGCgGCCAgCACGg -3'
miRNA:   3'- cCGCA-GUu-CCUUGCUGaCGGU-GUGCa -5'
12811 3' -53.7 NC_003387.1 + 5509 0.66 0.773824
Target:  5'- aGGUGaUCGAGcAGCGGCUcGCC-CGCGa -3'
miRNA:   3'- -CCGC-AGUUCcUUGCUGA-CGGuGUGCa -5'
12811 3' -53.7 NC_003387.1 + 50291 0.66 0.813135
Target:  5'- aGGcCGUCGA-GAACGGCUggGCCgucaACGCGa -3'
miRNA:   3'- -CC-GCAGUUcCUUGCUGA--CGG----UGUGCa -5'
12811 3' -53.7 NC_003387.1 + 21636 0.7 0.589101
Target:  5'- aGGCGUCGAGcgucagcucgucGAccGCGGCggcgGCCgaGCACGUg -3'
miRNA:   3'- -CCGCAGUUC------------CU--UGCUGa---CGG--UGUGCA- -5'
12811 3' -53.7 NC_003387.1 + 32289 0.69 0.633461
Target:  5'- gGGCG-CGAGGAGCaccGGCgGCUGCACa- -3'
miRNA:   3'- -CCGCaGUUCCUUG---CUGaCGGUGUGca -5'
12811 3' -53.7 NC_003387.1 + 29719 0.68 0.655673
Target:  5'- cGGCGcCcAGGccGACGACggcaGCUACGCGg -3'
miRNA:   3'- -CCGCaGuUCC--UUGCUGa---CGGUGUGCa -5'
12811 3' -53.7 NC_003387.1 + 3240 0.68 0.677795
Target:  5'- cGGCGagUCAuGGGAGCaACUGCUGCGCc- -3'
miRNA:   3'- -CCGC--AGU-UCCUUGcUGACGGUGUGca -5'
12811 3' -53.7 NC_003387.1 + 35885 0.68 0.688796
Target:  5'- aGCGUCAAGGGGCacgucGAcCUGCUGCgguACGUc -3'
miRNA:   3'- cCGCAGUUCCUUG-----CU-GACGGUG---UGCA- -5'
12811 3' -53.7 NC_003387.1 + 41162 0.67 0.763594
Target:  5'- aGUGUCAGGGcgaguGCGGCcgGUCGCACc- -3'
miRNA:   3'- cCGCAGUUCCu----UGCUGa-CGGUGUGca -5'
12811 3' -53.7 NC_003387.1 + 5191 0.67 0.742734
Target:  5'- gGGCaUCAAGGccCGGCUGUgGCGCc- -3'
miRNA:   3'- -CCGcAGUUCCuuGCUGACGgUGUGca -5'
12811 3' -53.7 NC_003387.1 + 41008 0.68 0.677795
Target:  5'- cGGCGUCGAcggccGGGuCGACUGCguCgACGg -3'
miRNA:   3'- -CCGCAGUU-----CCUuGCUGACGguG-UGCa -5'
12811 3' -53.7 NC_003387.1 + 15111 0.73 0.403299
Target:  5'- cGGCGUCAAcGGGGCGcCUGaCCcuguGCGCGa -3'
miRNA:   3'- -CCGCAGUU-CCUUGCuGAC-GG----UGUGCa -5'
12811 3' -53.7 NC_003387.1 + 40375 0.67 0.753227
Target:  5'- cGGgGcCAAGGGccucgacgucgGCGGCgaGCUGCACGUg -3'
miRNA:   3'- -CCgCaGUUCCU-----------UGCUGa-CGGUGUGCA- -5'
12811 3' -53.7 NC_003387.1 + 25375 0.72 0.451481
Target:  5'- cGGCGaggUCGAGGGgcuGCGGCUGCUcgacgagaaggcGCGCGa -3'
miRNA:   3'- -CCGC---AGUUCCU---UGCUGACGG------------UGUGCa -5'
12811 3' -53.7 NC_003387.1 + 7332 0.68 0.677795
Target:  5'- uGCGcUCAAGcAACGGCUGCgGC-CGUa -3'
miRNA:   3'- cCGC-AGUUCcUUGCUGACGgUGuGCA- -5'
12811 3' -53.7 NC_003387.1 + 41080 0.67 0.760498
Target:  5'- cGCGaUCGAGGGGCGaucgugagccgcgaGCUGCUggcgcuGCACGa -3'
miRNA:   3'- cCGC-AGUUCCUUGC--------------UGACGG------UGUGCa -5'
12811 3' -53.7 NC_003387.1 + 44587 0.67 0.763594
Target:  5'- aGGCGauccUCAAGGAgucgaGCGACgccgucggGCCgugGCGCGa -3'
miRNA:   3'- -CCGC----AGUUCCU-----UGCUGa-------CGG---UGUGCa -5'
12811 3' -53.7 NC_003387.1 + 16857 0.7 0.578081
Target:  5'- cGCG-CGAGGAgAUGGC-GCCGCACGc -3'
miRNA:   3'- cCGCaGUUCCU-UGCUGaCGGUGUGCa -5'
12811 3' -53.7 NC_003387.1 + 15466 0.68 0.655673
Target:  5'- cGCGgCGAGGAugGuCUGC-GCACGg -3'
miRNA:   3'- cCGCaGUUCCUugCuGACGgUGUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.