miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12811 5' -58.6 NC_003387.1 + 31262 0.66 0.566585
Target:  5'- cGCGGGCUgCGCCAGCgGG---GcCGGGu -3'
miRNA:   3'- -CGUCCGA-GCGGUCGgCUgagCuGUCC- -5'
12811 5' -58.6 NC_003387.1 + 47942 0.66 0.565529
Target:  5'- cGCGGGCcugcgacaugaagUcacggCGCCGGaUCGACUCGACAc- -3'
miRNA:   3'- -CGUCCG-------------A-----GCGGUC-GGCUGAGCUGUcc -5'
12811 5' -58.6 NC_003387.1 + 2264 0.66 0.545559
Target:  5'- cGCGGGC-CGg-GGUCGGCUCGACGu- -3'
miRNA:   3'- -CGUCCGaGCggUCGGCUGAGCUGUcc -5'
12811 5' -58.6 NC_003387.1 + 48781 0.66 0.545559
Target:  5'- cGCAGccaGCUCGCC-GCUGAUcgccgCGGCGGcGg -3'
miRNA:   3'- -CGUC---CGAGCGGuCGGCUGa----GCUGUC-C- -5'
12811 5' -58.6 NC_003387.1 + 7085 0.66 0.542425
Target:  5'- cCAGGCggccgaucuucgccUCGCCGuacGCCGACUCcuGCAGc -3'
miRNA:   3'- cGUCCG--------------AGCGGU---CGGCUGAGc-UGUCc -5'
12811 5' -58.6 NC_003387.1 + 19572 0.66 0.535139
Target:  5'- aGUcGGCUgGCgAGCCuGCUCGGCGu- -3'
miRNA:   3'- -CGuCCGAgCGgUCGGcUGAGCUGUcc -5'
12811 5' -58.6 NC_003387.1 + 45262 0.66 0.535139
Target:  5'- gGCuGGaauggaUCGCCAcGCCGACcccgUCgGGCGGGc -3'
miRNA:   3'- -CGuCCg-----AGCGGU-CGGCUG----AG-CUGUCC- -5'
12811 5' -58.6 NC_003387.1 + 30029 0.66 0.535139
Target:  5'- cCAGGC-CGCCAgcGCCGcCgUCGACAc- -3'
miRNA:   3'- cGUCCGaGCGGU--CGGCuG-AGCUGUcc -5'
12811 5' -58.6 NC_003387.1 + 28793 0.66 0.524789
Target:  5'- cGC-GGUcgaGCCAGCCGggcaGCUCGACGa- -3'
miRNA:   3'- -CGuCCGag-CGGUCGGC----UGAGCUGUcc -5'
12811 5' -58.6 NC_003387.1 + 48058 0.66 0.524789
Target:  5'- uGCuuGGCggCGUCGGCCG-CUUGGCGccGGg -3'
miRNA:   3'- -CGu-CCGa-GCGGUCGGCuGAGCUGU--CC- -5'
12811 5' -58.6 NC_003387.1 + 35648 0.66 0.514517
Target:  5'- gGCGGGCa--CUGGCCGAcCUCGACcgcGGGc -3'
miRNA:   3'- -CGUCCGagcGGUCGGCU-GAGCUG---UCC- -5'
12811 5' -58.6 NC_003387.1 + 50843 0.66 0.514517
Target:  5'- cGCGGGCugaUCGCCAuGCgucaaCGugUCGGCGu- -3'
miRNA:   3'- -CGUCCG---AGCGGU-CG-----GCugAGCUGUcc -5'
12811 5' -58.6 NC_003387.1 + 47003 0.66 0.514517
Target:  5'- cGCGGGC-CGCCugguGCuCGACUucauUGGCGGc -3'
miRNA:   3'- -CGUCCGaGCGGu---CG-GCUGA----GCUGUCc -5'
12811 5' -58.6 NC_003387.1 + 49172 0.67 0.504328
Target:  5'- cGCAGGCggUCGCgCAGgCGGCggccgUCGACGu- -3'
miRNA:   3'- -CGUCCG--AGCG-GUCgGCUG-----AGCUGUcc -5'
12811 5' -58.6 NC_003387.1 + 17126 0.67 0.504327
Target:  5'- cGUAGGCgaUCGCUGuGUCGACcagcUCGGcCAGGg -3'
miRNA:   3'- -CGUCCG--AGCGGU-CGGCUG----AGCU-GUCC- -5'
12811 5' -58.6 NC_003387.1 + 47317 0.67 0.498256
Target:  5'- gGCGGGCUUGCCuucggugguuucgguGGUCGACUCa----- -3'
miRNA:   3'- -CGUCCGAGCGG---------------UCGGCUGAGcugucc -5'
12811 5' -58.6 NC_003387.1 + 161 0.67 0.494226
Target:  5'- aGCuGGGCcUGCUGGCCGACggcaaGACGGu -3'
miRNA:   3'- -CG-UCCGaGCGGUCGGCUGag---CUGUCc -5'
12811 5' -58.6 NC_003387.1 + 42199 0.67 0.494226
Target:  5'- gGCGGGCgugCGCgAGCagGACggCGACcGGc -3'
miRNA:   3'- -CGUCCGa--GCGgUCGg-CUGa-GCUGuCC- -5'
12811 5' -58.6 NC_003387.1 + 44292 0.67 0.494226
Target:  5'- aGCGGGUgugcucgaguuuUUGCCGGCgGuuaGCUaCGGCGGGc -3'
miRNA:   3'- -CGUCCG------------AGCGGUCGgC---UGA-GCUGUCC- -5'
12811 5' -58.6 NC_003387.1 + 18555 0.67 0.484218
Target:  5'- cGCAGGCgugUGCCcacaggugcgGGUCGACccaggCGuCAGGg -3'
miRNA:   3'- -CGUCCGa--GCGG----------UCGGCUGa----GCuGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.