miRNA display CGI


Results 21 - 40 of 90 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12811 5' -58.6 NC_003387.1 + 27682 0.67 0.484218
Target:  5'- aGCucuGGCgcgagUGCUGcGCCGACccCGACAGGc -3'
miRNA:   3'- -CGu--CCGa----GCGGU-CGGCUGa-GCUGUCC- -5'
12811 5' -58.6 NC_003387.1 + 22837 0.67 0.484218
Target:  5'- cGCGGGCuguugacccgUcaacacgaaagCGCCcucGCCGACgaaUCGACAGGg -3'
miRNA:   3'- -CGUCCG----------A-----------GCGGu--CGGCUG---AGCUGUCC- -5'
12811 5' -58.6 NC_003387.1 + 34419 0.67 0.484218
Target:  5'- cCGGGCgccacCGCCgcGGCCGGgUCGGCGcuGGu -3'
miRNA:   3'- cGUCCGa----GCGG--UCGGCUgAGCUGU--CC- -5'
12811 5' -58.6 NC_003387.1 + 20964 0.67 0.484218
Target:  5'- uGCGGGCUCGgCGaCCaGgUCGAgCAGGg -3'
miRNA:   3'- -CGUCCGAGCgGUcGGcUgAGCU-GUCC- -5'
12811 5' -58.6 NC_003387.1 + 18555 0.67 0.484218
Target:  5'- cGCAGGCgugUGCCcacaggugcgGGUCGACccaggCGuCAGGg -3'
miRNA:   3'- -CGUCCGa--GCGG----------UCGGCUGa----GCuGUCC- -5'
12811 5' -58.6 NC_003387.1 + 3493 0.67 0.484218
Target:  5'- aGCA-GC-CGCuCGGCCGcCUCGACcGGc -3'
miRNA:   3'- -CGUcCGaGCG-GUCGGCuGAGCUGuCC- -5'
12811 5' -58.6 NC_003387.1 + 5942 0.67 0.484218
Target:  5'- aCAGGUuuccgCGCgAGgaCCGAcCUCGGCGGGa -3'
miRNA:   3'- cGUCCGa----GCGgUC--GGCU-GAGCUGUCC- -5'
12811 5' -58.6 NC_003387.1 + 13541 0.67 0.482228
Target:  5'- -uGGGCUCGCUguucaagGGCCugGGCagcccgaUCGACGGGc -3'
miRNA:   3'- cgUCCGAGCGG-------UCGG--CUG-------AGCUGUCC- -5'
12811 5' -58.6 NC_003387.1 + 12336 0.67 0.474308
Target:  5'- uGCA-GCUCGCC-GCCGACgUCGAg--- -3'
miRNA:   3'- -CGUcCGAGCGGuCGGCUG-AGCUgucc -5'
12811 5' -58.6 NC_003387.1 + 6851 0.67 0.474308
Target:  5'- cGCucGGCcgcggCGCgCAGCCGcagcaGCUCGcGCAGGa -3'
miRNA:   3'- -CGu-CCGa----GCG-GUCGGC-----UGAGC-UGUCC- -5'
12811 5' -58.6 NC_003387.1 + 81 0.67 0.472338
Target:  5'- cGCGGGCguUUGCUGGCuCGACUCcccugcauaaccGCAGGu -3'
miRNA:   3'- -CGUCCG--AGCGGUCG-GCUGAGc-----------UGUCC- -5'
12811 5' -58.6 NC_003387.1 + 31186 0.67 0.468411
Target:  5'- cGCGGGCgucgccggUGCUgauacucagcgcagcGGCCGGCUCGuGCAGc -3'
miRNA:   3'- -CGUCCGa-------GCGG---------------UCGGCUGAGC-UGUCc -5'
12811 5' -58.6 NC_003387.1 + 25470 0.67 0.464501
Target:  5'- cCAGGCaUGCCgGGCCGcCUCGACc-- -3'
miRNA:   3'- cGUCCGaGCGG-UCGGCuGAGCUGucc -5'
12811 5' -58.6 NC_003387.1 + 15270 0.67 0.464501
Target:  5'- cGCAGcGC-CGCCAGCaUGGCaaccgUCGGCGGc -3'
miRNA:   3'- -CGUC-CGaGCGGUCG-GCUG-----AGCUGUCc -5'
12811 5' -58.6 NC_003387.1 + 695 0.67 0.464501
Target:  5'- cGCAGGgccuugaUCGCCucgucgucgagGGCCGACaggUCGgGCAGGu -3'
miRNA:   3'- -CGUCCg------AGCGG-----------UCGGCUG---AGC-UGUCC- -5'
12811 5' -58.6 NC_003387.1 + 6962 0.67 0.464501
Target:  5'- gGCAGGCgccacagcgCGCCcucGGCC-ACUUGuGCAGGc -3'
miRNA:   3'- -CGUCCGa--------GCGG---UCGGcUGAGC-UGUCC- -5'
12811 5' -58.6 NC_003387.1 + 27424 0.67 0.464501
Target:  5'- aGCAcacuGGCU-GCCAGuaGAagaUCGACGGGu -3'
miRNA:   3'- -CGU----CCGAgCGGUCggCUg--AGCUGUCC- -5'
12811 5' -58.6 NC_003387.1 + 12424 0.67 0.464501
Target:  5'- gGCGGcGCUUGCCGucGUCGucCUCGAUcgAGGg -3'
miRNA:   3'- -CGUC-CGAGCGGU--CGGCu-GAGCUG--UCC- -5'
12811 5' -58.6 NC_003387.1 + 30717 0.67 0.463526
Target:  5'- uGCGGGg-CGCuCAGCCGggcaggugacccgGCUCGuCGGGc -3'
miRNA:   3'- -CGUCCgaGCG-GUCGGC-------------UGAGCuGUCC- -5'
12811 5' -58.6 NC_003387.1 + 36968 0.67 0.453836
Target:  5'- cGCAGGCUguaCGCCccgaucaugcugcGGCUGAUcCGGCGcGGg -3'
miRNA:   3'- -CGUCCGA---GCGG-------------UCGGCUGaGCUGU-CC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.