Results 1 - 20 of 146 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12812 | 3' | -59.2 | NC_003387.1 | + | 50912 | 0.66 | 0.487337 |
Target: 5'- aUAUCGgCCGCGCCgGUcagCUUCAccuugaccuugcGGGCu -3' miRNA: 3'- aAUGGCgGGUGCGGgCG---GAAGU------------UCCG- -5' |
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12812 | 3' | -59.2 | NC_003387.1 | + | 49101 | 0.66 | 0.487337 |
Target: 5'- aUACC-CgCACGCCCGCUcagCucGGCc -3' miRNA: 3'- aAUGGcGgGUGCGGGCGGaa-GuuCCG- -5' |
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12812 | 3' | -59.2 | NC_003387.1 | + | 42099 | 0.66 | 0.487337 |
Target: 5'- -cACCGCCgcgguCGCGuCCUGCaugacCGAGGCg -3' miRNA: 3'- aaUGGCGG-----GUGC-GGGCGgaa--GUUCCG- -5' |
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12812 | 3' | -59.2 | NC_003387.1 | + | 31503 | 0.66 | 0.487337 |
Target: 5'- -gAUCGCCCuGCGCCCGCacgcugUUCcacgcGGCc -3' miRNA: 3'- aaUGGCGGG-UGCGGGCGg-----AAGuu---CCG- -5' |
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12812 | 3' | -59.2 | NC_003387.1 | + | 26151 | 0.66 | 0.487337 |
Target: 5'- -aGCaUGCCCGgcacCGCCCGCa---AGGGCg -3' miRNA: 3'- aaUG-GCGGGU----GCGGGCGgaagUUCCG- -5' |
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12812 | 3' | -59.2 | NC_003387.1 | + | 10375 | 0.66 | 0.487337 |
Target: 5'- -gGCCGCaagCugGCCCGCaacCucGGCg -3' miRNA: 3'- aaUGGCGg--GugCGGGCGgaaGuuCCG- -5' |
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12812 | 3' | -59.2 | NC_003387.1 | + | 21544 | 0.66 | 0.481277 |
Target: 5'- -cACCGgCgACGCCCGCgUcgUCGugcagaccguggcccAGGCg -3' miRNA: 3'- aaUGGCgGgUGCGGGCGgA--AGU---------------UCCG- -5' |
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12812 | 3' | -59.2 | NC_003387.1 | + | 33438 | 0.66 | 0.477257 |
Target: 5'- cUGCUGCUgCGCGCCaccaCCUcgcgCAAGGCg -3' miRNA: 3'- aAUGGCGG-GUGCGGgc--GGAa---GUUCCG- -5' |
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12812 | 3' | -59.2 | NC_003387.1 | + | 26142 | 0.66 | 0.477257 |
Target: 5'- -cGCCGCUCGCG-CgGCCUgacccCGAGGa -3' miRNA: 3'- aaUGGCGGGUGCgGgCGGAa----GUUCCg -5' |
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12812 | 3' | -59.2 | NC_003387.1 | + | 39408 | 0.66 | 0.477257 |
Target: 5'- --cUUGCCCAgGUcgCUGCCgUCGAGGCc -3' miRNA: 3'- aauGGCGGGUgCG--GGCGGaAGUUCCG- -5' |
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12812 | 3' | -59.2 | NC_003387.1 | + | 22168 | 0.66 | 0.477257 |
Target: 5'- gUACCGgCCGCGgCgGCgguccaugUCGGGGCg -3' miRNA: 3'- aAUGGCgGGUGCgGgCGga------AGUUCCG- -5' |
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12812 | 3' | -59.2 | NC_003387.1 | + | 43334 | 0.66 | 0.477257 |
Target: 5'- -gAUCGUCU-UGCCCGCCU-CGGGGg -3' miRNA: 3'- aaUGGCGGGuGCGGGCGGAaGUUCCg -5' |
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12812 | 3' | -59.2 | NC_003387.1 | + | 32609 | 0.66 | 0.467281 |
Target: 5'- --cCUGCUCGgGCUCGCCgcgGGGGCg -3' miRNA: 3'- aauGGCGGGUgCGGGCGGaagUUCCG- -5' |
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12812 | 3' | -59.2 | NC_003387.1 | + | 17813 | 0.66 | 0.467281 |
Target: 5'- gUACCGUUCGagauUGCCCGCCUU---GGUg -3' miRNA: 3'- aAUGGCGGGU----GCGGGCGGAAguuCCG- -5' |
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12812 | 3' | -59.2 | NC_003387.1 | + | 5231 | 0.66 | 0.461348 |
Target: 5'- aUGCUGCUCGacaugcugaacaacuCGCCCGCUgugcGGGCg -3' miRNA: 3'- aAUGGCGGGU---------------GCGGGCGGaaguUCCG- -5' |
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12812 | 3' | -59.2 | NC_003387.1 | + | 39759 | 0.66 | 0.457414 |
Target: 5'- -gGCCGCCCGguacgagcCGCCagaCGCCgaCGuGGCa -3' miRNA: 3'- aaUGGCGGGU--------GCGG---GCGGaaGUuCCG- -5' |
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12812 | 3' | -59.2 | NC_003387.1 | + | 20345 | 0.66 | 0.451548 |
Target: 5'- ---gCGCCUGCGacguacaacuacaacCUCGCCUUgAAGGCg -3' miRNA: 3'- aaugGCGGGUGC---------------GGGCGGAAgUUCCG- -5' |
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12812 | 3' | -59.2 | NC_003387.1 | + | 45079 | 0.66 | 0.44766 |
Target: 5'- -gGCCGUCCugGgCCgGUgUUCGGcGGCc -3' miRNA: 3'- aaUGGCGGGugC-GGgCGgAAGUU-CCG- -5' |
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12812 | 3' | -59.2 | NC_003387.1 | + | 13068 | 0.66 | 0.44766 |
Target: 5'- cUGCUGCucCCACGCCaUGCgCgacaccgggUCGAGGCu -3' miRNA: 3'- aAUGGCG--GGUGCGG-GCG-Ga--------AGUUCCG- -5' |
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12812 | 3' | -59.2 | NC_003387.1 | + | 30690 | 0.66 | 0.44766 |
Target: 5'- -cACCGCCCacggaaugucgACGCCgCGCUcuagcgUCAcGGCc -3' miRNA: 3'- aaUGGCGGG-----------UGCGG-GCGGa-----AGUuCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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