miRNA display CGI


Results 1 - 20 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12812 3' -59.2 NC_003387.1 + 50912 0.66 0.487337
Target:  5'- aUAUCGgCCGCGCCgGUcagCUUCAccuugaccuugcGGGCu -3'
miRNA:   3'- aAUGGCgGGUGCGGgCG---GAAGU------------UCCG- -5'
12812 3' -59.2 NC_003387.1 + 24634 0.66 0.446691
Target:  5'- gUUGCCGCCCugGUCgauagguucgacgCGCagcgaguaCGAGGCg -3'
miRNA:   3'- -AAUGGCGGGugCGG-------------GCGgaa-----GUUCCG- -5'
12812 3' -59.2 NC_003387.1 + 48389 0.66 0.438022
Target:  5'- -cGuuGCgCugGUgCGCCUUCucGGCg -3'
miRNA:   3'- aaUggCGgGugCGgGCGGAAGuuCCG- -5'
12812 3' -59.2 NC_003387.1 + 8981 0.66 0.438022
Target:  5'- gUGCCGCCaaCACGCUCGC-----GGGCu -3'
miRNA:   3'- aAUGGCGG--GUGCGGGCGgaaguUCCG- -5'
12812 3' -59.2 NC_003387.1 + 1427 0.66 0.438022
Target:  5'- -cGCCGCCgACGa--GCUggCAGGGCu -3'
miRNA:   3'- aaUGGCGGgUGCgggCGGaaGUUCCG- -5'
12812 3' -59.2 NC_003387.1 + 51148 0.66 0.438022
Target:  5'- -gACCGCCagggcguuagGCGCuUCGCCguccUCGGGGCc -3'
miRNA:   3'- aaUGGCGGg---------UGCG-GGCGGa---AGUUCCG- -5'
12812 3' -59.2 NC_003387.1 + 28177 0.66 0.438022
Target:  5'- -cGCCGUaUugGUUCGuCUUUCAGGGCg -3'
miRNA:   3'- aaUGGCGgGugCGGGC-GGAAGUUCCG- -5'
12812 3' -59.2 NC_003387.1 + 7549 0.66 0.443791
Target:  5'- cUGCCGCCCugGCCgaucgCGUCaUCAcugaguacacgauGGCg -3'
miRNA:   3'- aAUGGCGGGugCGG-----GCGGaAGUu------------CCG- -5'
12812 3' -59.2 NC_003387.1 + 110 0.66 0.44766
Target:  5'- -aGCUGaUgCGCGCCCGCCU-CGAuGCg -3'
miRNA:   3'- aaUGGC-GgGUGCGGGCGGAaGUUcCG- -5'
12812 3' -59.2 NC_003387.1 + 13068 0.66 0.44766
Target:  5'- cUGCUGCucCCACGCCaUGCgCgacaccgggUCGAGGCu -3'
miRNA:   3'- aAUGGCG--GGUGCGG-GCG-Ga--------AGUUCCG- -5'
12812 3' -59.2 NC_003387.1 + 30690 0.66 0.44766
Target:  5'- -cACCGCCCacggaaugucgACGCCgCGCUcuagcgUCAcGGCc -3'
miRNA:   3'- aaUGGCGGG-----------UGCGG-GCGGa-----AGUuCCG- -5'
12812 3' -59.2 NC_003387.1 + 39759 0.66 0.457414
Target:  5'- -gGCCGCCCGguacgagcCGCCagaCGCCgaCGuGGCa -3'
miRNA:   3'- aaUGGCGGGU--------GCGG---GCGGaaGUuCCG- -5'
12812 3' -59.2 NC_003387.1 + 49101 0.66 0.487337
Target:  5'- aUACC-CgCACGCCCGCUcagCucGGCc -3'
miRNA:   3'- aAUGGcGgGUGCGGGCGGaa-GuuCCG- -5'
12812 3' -59.2 NC_003387.1 + 42099 0.66 0.487337
Target:  5'- -cACCGCCgcgguCGCGuCCUGCaugacCGAGGCg -3'
miRNA:   3'- aaUGGCGG-----GUGC-GGGCGgaa--GUUCCG- -5'
12812 3' -59.2 NC_003387.1 + 31503 0.66 0.487337
Target:  5'- -gAUCGCCCuGCGCCCGCacgcugUUCcacgcGGCc -3'
miRNA:   3'- aaUGGCGGG-UGCGGGCGg-----AAGuu---CCG- -5'
12812 3' -59.2 NC_003387.1 + 26151 0.66 0.487337
Target:  5'- -aGCaUGCCCGgcacCGCCCGCa---AGGGCg -3'
miRNA:   3'- aaUG-GCGGGU----GCGGGCGgaagUUCCG- -5'
12812 3' -59.2 NC_003387.1 + 43334 0.66 0.477257
Target:  5'- -gAUCGUCU-UGCCCGCCU-CGGGGg -3'
miRNA:   3'- aaUGGCGGGuGCGGGCGGAaGUUCCg -5'
12812 3' -59.2 NC_003387.1 + 22168 0.66 0.477257
Target:  5'- gUACCGgCCGCGgCgGCgguccaugUCGGGGCg -3'
miRNA:   3'- aAUGGCgGGUGCgGgCGga------AGUUCCG- -5'
12812 3' -59.2 NC_003387.1 + 39408 0.66 0.477257
Target:  5'- --cUUGCCCAgGUcgCUGCCgUCGAGGCc -3'
miRNA:   3'- aauGGCGGGUgCG--GGCGGaAGUUCCG- -5'
12812 3' -59.2 NC_003387.1 + 17813 0.66 0.467281
Target:  5'- gUACCGUUCGagauUGCCCGCCUU---GGUg -3'
miRNA:   3'- aAUGGCGGGU----GCGGGCGGAAguuCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.