miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12812 5' -55.4 NC_003387.1 + 6446 0.66 0.673271
Target:  5'- -gAgGUCGUGGGCgGCGU-CGCCaACGAg -3'
miRNA:   3'- caUgCAGCGUCCG-CGUAaGCGG-UGUU- -5'
12812 5' -55.4 NC_003387.1 + 23271 0.66 0.673271
Target:  5'- -gACGU-GCuGGCGCAccggCGCUACGAc -3'
miRNA:   3'- caUGCAgCGuCCGCGUaa--GCGGUGUU- -5'
12812 5' -55.4 NC_003387.1 + 32033 0.66 0.673271
Target:  5'- -cGCGUCGCccccgagucGGGuCGCAagucugUCGCCGCc- -3'
miRNA:   3'- caUGCAGCG---------UCC-GCGUa-----AGCGGUGuu -5'
12812 5' -55.4 NC_003387.1 + 45922 0.66 0.672155
Target:  5'- aGUACGUCgGCAcgugcccGaGCGUGUUCGCCgACGg -3'
miRNA:   3'- -CAUGCAG-CGU-------C-CGCGUAAGCGG-UGUu -5'
12812 5' -55.4 NC_003387.1 + 8296 0.66 0.660981
Target:  5'- -cGCGUCgGCGGGCaGCAUcgcgagcacagcgUCaGCCGCGg -3'
miRNA:   3'- caUGCAG-CGUCCG-CGUA-------------AG-CGGUGUu -5'
12812 5' -55.4 NC_003387.1 + 20170 0.66 0.650899
Target:  5'- -gGCGUCGaGGGCGCGguugaugCGCUGCu- -3'
miRNA:   3'- caUGCAGCgUCCGCGUaa-----GCGGUGuu -5'
12812 5' -55.4 NC_003387.1 + 30908 0.66 0.650899
Target:  5'- cGUugGUCGCcacGGCGuCGcUCGCCGa-- -3'
miRNA:   3'- -CAugCAGCGu--CCGC-GUaAGCGGUguu -5'
12812 5' -55.4 NC_003387.1 + 38209 0.66 0.650898
Target:  5'- aGUACcgcaCGCAGGCGCAccuguaUgGCCGCGg -3'
miRNA:   3'- -CAUGca--GCGUCCGCGUa-----AgCGGUGUu -5'
12812 5' -55.4 NC_003387.1 + 48130 0.66 0.639679
Target:  5'- -cACGUgGCAGacccgcGCGCAgcgCGCCACc- -3'
miRNA:   3'- caUGCAgCGUC------CGCGUaa-GCGGUGuu -5'
12812 5' -55.4 NC_003387.1 + 31967 0.66 0.617231
Target:  5'- -cGCGccUUGCAGGCGCA-UCGagCACAGg -3'
miRNA:   3'- caUGC--AGCGUCCGCGUaAGCg-GUGUU- -5'
12812 5' -55.4 NC_003387.1 + 50794 0.66 0.617231
Target:  5'- cUGCGUCGCggaucGGGCGUuuacgggCGCCAgCGAg -3'
miRNA:   3'- cAUGCAGCG-----UCCGCGuaa----GCGGU-GUU- -5'
12812 5' -55.4 NC_003387.1 + 34413 0.67 0.606022
Target:  5'- --cCGUUGcCGGGCGCcacCGCCGCGg -3'
miRNA:   3'- cauGCAGC-GUCCGCGuaaGCGGUGUu -5'
12812 5' -55.4 NC_003387.1 + 52222 0.67 0.594837
Target:  5'- -cGCGgucgccaCGCGGGCGCGcaUCGCgACGAg -3'
miRNA:   3'- caUGCa------GCGUCCGCGUa-AGCGgUGUU- -5'
12812 5' -55.4 NC_003387.1 + 41778 0.67 0.583684
Target:  5'- -gACGUCaagcCGGGCGCGU--GCCGCGAc -3'
miRNA:   3'- caUGCAGc---GUCCGCGUAagCGGUGUU- -5'
12812 5' -55.4 NC_003387.1 + 34526 0.67 0.572573
Target:  5'- -cGCGUCGCcgAGGCGCAccUCGCagcCGAu -3'
miRNA:   3'- caUGCAGCG--UCCGCGUa-AGCGgu-GUU- -5'
12812 5' -55.4 NC_003387.1 + 41332 0.67 0.572573
Target:  5'- -cGCGgccaGCGuGGCGCcgaUCGCCGCAAa -3'
miRNA:   3'- caUGCag--CGU-CCGCGua-AGCGGUGUU- -5'
12812 5' -55.4 NC_003387.1 + 21224 0.67 0.561513
Target:  5'- cGUGCGggCGCAgGGCgauccggucgGCAUggugCGCCGCGAc -3'
miRNA:   3'- -CAUGCa-GCGU-CCG----------CGUAa---GCGGUGUU- -5'
12812 5' -55.4 NC_003387.1 + 19239 0.67 0.561513
Target:  5'- -cGCGaUCGCGGGCGCcgacCGCCucgGCGAc -3'
miRNA:   3'- caUGC-AGCGUCCGCGuaa-GCGG---UGUU- -5'
12812 5' -55.4 NC_003387.1 + 1944 0.68 0.550512
Target:  5'- -cGCGaCGCAGGCGguUggggcugggacCGCCGCGAc -3'
miRNA:   3'- caUGCaGCGUCCGCguAa----------GCGGUGUU- -5'
12812 5' -55.4 NC_003387.1 + 14626 0.68 0.539579
Target:  5'- -aAgGUCGCAGGUGCccgucaggcCGCCGCGc -3'
miRNA:   3'- caUgCAGCGUCCGCGuaa------GCGGUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.