miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12812 5' -55.4 NC_003387.1 + 32386 1.06 0.001239
Target:  5'- uGUACGUCGCAGGCGCAUUCGCCACAAa -3'
miRNA:   3'- -CAUGCAGCGUCCGCGUAAGCGGUGUU- -5'
12812 5' -55.4 NC_003387.1 + 5845 0.75 0.204537
Target:  5'- cUGCGcCGCAGGUGgGggCGCCGCAAc -3'
miRNA:   3'- cAUGCaGCGUCCGCgUaaGCGGUGUU- -5'
12812 5' -55.4 NC_003387.1 + 9432 0.73 0.269702
Target:  5'- aGUACGaCGCGGGCGCcgagcuguucugCGCCACGu -3'
miRNA:   3'- -CAUGCaGCGUCCGCGuaa---------GCGGUGUu -5'
12812 5' -55.4 NC_003387.1 + 48169 0.73 0.273931
Target:  5'- -cGCGgucgCGCAGGCGCAggC-CCGCAAg -3'
miRNA:   3'- caUGCa---GCGUCCGCGUaaGcGGUGUU- -5'
12812 5' -55.4 NC_003387.1 + 1314 0.72 0.327226
Target:  5'- -gGCGcCGCAGGCGC--UCGCCGg-- -3'
miRNA:   3'- caUGCaGCGUCCGCGuaAGCGGUguu -5'
12812 5' -55.4 NC_003387.1 + 30968 0.71 0.35231
Target:  5'- -cGCGUCGguGGCGCugaCGCCGa-- -3'
miRNA:   3'- caUGCAGCguCCGCGuaaGCGGUguu -5'
12812 5' -55.4 NC_003387.1 + 22432 0.7 0.387823
Target:  5'- -cGCGUCGUcccAGGCGCGg--GCCGCGg -3'
miRNA:   3'- caUGCAGCG---UCCGCGUaagCGGUGUu -5'
12812 5' -55.4 NC_003387.1 + 18240 0.7 0.387823
Target:  5'- cGUAC-UCGUAGGcCGCAUcCGCCGCc- -3'
miRNA:   3'- -CAUGcAGCGUCC-GCGUAaGCGGUGuu -5'
12812 5' -55.4 NC_003387.1 + 4788 0.69 0.445306
Target:  5'- -cAUGUCGCAGGCccGCGgcgacgGCCACAAc -3'
miRNA:   3'- caUGCAGCGUCCG--CGUaag---CGGUGUU- -5'
12812 5' -55.4 NC_003387.1 + 51439 0.69 0.454335
Target:  5'- -gGCGUCG-AGGCGCAUcaccgugaacaccUCGCCGgGGu -3'
miRNA:   3'- caUGCAGCgUCCGCGUA-------------AGCGGUgUU- -5'
12812 5' -55.4 NC_003387.1 + 50873 0.69 0.462443
Target:  5'- -gGCGUUGacgccguucucaaaCAGGCGCAgcccUUCGCCAUAu -3'
miRNA:   3'- caUGCAGC--------------GUCCGCGU----AAGCGGUGUu -5'
12812 5' -55.4 NC_003387.1 + 18860 0.69 0.475778
Target:  5'- uGU-CGUCGCccgAGGCGC--UCGUCGCGAg -3'
miRNA:   3'- -CAuGCAGCG---UCCGCGuaAGCGGUGUU- -5'
12812 5' -55.4 NC_003387.1 + 39462 0.69 0.475778
Target:  5'- uGUACGa-GCGGGCGCGgugggaaaUCGCCAUg- -3'
miRNA:   3'- -CAUGCagCGUCCGCGUa-------AGCGGUGuu -5'
12812 5' -55.4 NC_003387.1 + 14687 0.69 0.475779
Target:  5'- --cCGaUCG-GGGCGCcgUCGCCGCGAu -3'
miRNA:   3'- cauGC-AGCgUCCGCGuaAGCGGUGUU- -5'
12812 5' -55.4 NC_003387.1 + 43109 0.69 0.486165
Target:  5'- gGUACGagCGCGacGGCGCgg-CGCCGCGGu -3'
miRNA:   3'- -CAUGCa-GCGU--CCGCGuaaGCGGUGUU- -5'
12812 5' -55.4 NC_003387.1 + 4611 0.68 0.4935
Target:  5'- -cACGUgaucggcgagccacCGCGGGCGCAgcggcagCGCCACc- -3'
miRNA:   3'- caUGCA--------------GCGUCCGCGUaa-----GCGGUGuu -5'
12812 5' -55.4 NC_003387.1 + 4856 0.68 0.496659
Target:  5'- gGUGuCGUCGUAGGacCGCug-CGCCAUAAg -3'
miRNA:   3'- -CAU-GCAGCGUCC--GCGuaaGCGGUGUU- -5'
12812 5' -55.4 NC_003387.1 + 6900 0.68 0.507253
Target:  5'- cGU-CGUCGCGGGC-CAUcaGCCGCGGg -3'
miRNA:   3'- -CAuGCAGCGUCCGcGUAagCGGUGUU- -5'
12812 5' -55.4 NC_003387.1 + 7841 0.68 0.507253
Target:  5'- -gGCG-CGCAGGCGgAaUCGCCgACGc -3'
miRNA:   3'- caUGCaGCGUCCGCgUaAGCGG-UGUu -5'
12812 5' -55.4 NC_003387.1 + 33371 0.68 0.528719
Target:  5'- -aAUGaUCGCGGGCGgAUgggacgcCGCCGCAGg -3'
miRNA:   3'- caUGC-AGCGUCCGCgUAa------GCGGUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.