miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12813 5' -56.9 NC_003387.1 + 23007 0.66 0.635572
Target:  5'- -cCGuCGUCggCCug-GGCGCCGCCGa -3'
miRNA:   3'- uaGC-GUAGgaGGuuaCUGCGGCGGCc -5'
12813 5' -56.9 NC_003387.1 + 48081 0.66 0.635572
Target:  5'- --aGCG-CCUCgAcggGUGGCGCUGCCGc -3'
miRNA:   3'- uagCGUaGGAGgU---UACUGCGGCGGCc -5'
12813 5' -56.9 NC_003387.1 + 50747 0.66 0.635572
Target:  5'- cGUCGCGUUUcaggUCAAgcUGGCGCUGcCCGGc -3'
miRNA:   3'- -UAGCGUAGGa---GGUU--ACUGCGGC-GGCC- -5'
12813 5' -56.9 NC_003387.1 + 42108 0.66 0.635572
Target:  5'- gGUCGCGUCCUgcaugaCCGA-GGCGaCCguGCUGGc -3'
miRNA:   3'- -UAGCGUAGGA------GGUUaCUGC-GG--CGGCC- -5'
12813 5' -56.9 NC_003387.1 + 13914 0.66 0.613728
Target:  5'- gGUgGCGcCCgaucggcaCC-AUGACGCCGCCGa -3'
miRNA:   3'- -UAgCGUaGGa-------GGuUACUGCGGCGGCc -5'
12813 5' -56.9 NC_003387.1 + 2546 0.66 0.602825
Target:  5'- gGUCGCGcaggaugaacUCg-CCGGUGGCGUuguCGCCGGu -3'
miRNA:   3'- -UAGCGU----------AGgaGGUUACUGCG---GCGGCC- -5'
12813 5' -56.9 NC_003387.1 + 14864 0.66 0.602825
Target:  5'- --aGCAUCgUCgAGgcgaGCCGCCGGg -3'
miRNA:   3'- uagCGUAGgAGgUUacugCGGCGGCC- -5'
12813 5' -56.9 NC_003387.1 + 44627 0.66 0.591946
Target:  5'- cUCGC--CCUCgGGcggguUGGCGCCGaCCGGc -3'
miRNA:   3'- uAGCGuaGGAGgUU-----ACUGCGGC-GGCC- -5'
12813 5' -56.9 NC_003387.1 + 48681 0.66 0.581101
Target:  5'- aAUCGUcgCC-CCAG-GAgGCCGCCa- -3'
miRNA:   3'- -UAGCGuaGGaGGUUaCUgCGGCGGcc -5'
12813 5' -56.9 NC_003387.1 + 24172 0.66 0.580019
Target:  5'- gAUCGCcgCCUcggucgcCCAAU--UGUCGCCGGg -3'
miRNA:   3'- -UAGCGuaGGA-------GGUUAcuGCGGCGGCC- -5'
12813 5' -56.9 NC_003387.1 + 30662 0.67 0.570298
Target:  5'- cGUCGCcaaCggugCCGGUGAuCGCCGCCa- -3'
miRNA:   3'- -UAGCGuagGa---GGUUACU-GCGGCGGcc -5'
12813 5' -56.9 NC_003387.1 + 31756 0.67 0.568143
Target:  5'- uUCGCGgcguugcccgccCCUgCCcgGAUGACGCCGCCcucGGg -3'
miRNA:   3'- uAGCGUa-----------GGA-GG--UUACUGCGGCGG---CC- -5'
12813 5' -56.9 NC_003387.1 + 15820 0.67 0.548848
Target:  5'- uGUCGCcgCCgguuGUGACGCCGaCgCGGu -3'
miRNA:   3'- -UAGCGuaGGagguUACUGCGGC-G-GCC- -5'
12813 5' -56.9 NC_003387.1 + 20737 0.67 0.538216
Target:  5'- uGUCGgccucaguCAUCCgCCAGUGACGaCCgaccuugcgGCCGGg -3'
miRNA:   3'- -UAGC--------GUAGGaGGUUACUGC-GG---------CGGCC- -5'
12813 5' -56.9 NC_003387.1 + 18337 0.67 0.527656
Target:  5'- gGUCGCG-CCguuUCCGuUGuCGCCGuuGGg -3'
miRNA:   3'- -UAGCGUaGG---AGGUuACuGCGGCggCC- -5'
12813 5' -56.9 NC_003387.1 + 41416 0.67 0.527656
Target:  5'- cUCGCcgagCUUgCCGcUGuCGCCGCCGGu -3'
miRNA:   3'- uAGCGua--GGA-GGUuACuGCGGCGGCC- -5'
12813 5' -56.9 NC_003387.1 + 135 0.68 0.506777
Target:  5'- gGUCGC--CCUCgCGAUccGCGCCGCCGa -3'
miRNA:   3'- -UAGCGuaGGAG-GUUAc-UGCGGCGGCc -5'
12813 5' -56.9 NC_003387.1 + 26105 0.68 0.486257
Target:  5'- -cCGCAUgCCgUCCAGcuuCGCCGCCGa -3'
miRNA:   3'- uaGCGUA-GG-AGGUUacuGCGGCGGCc -5'
12813 5' -56.9 NC_003387.1 + 30580 0.69 0.456244
Target:  5'- -gUGCcgCCgCCAGUGaACGUCGCCGu -3'
miRNA:   3'- uaGCGuaGGaGGUUAC-UGCGGCGGCc -5'
12813 5' -56.9 NC_003387.1 + 27638 0.69 0.456244
Target:  5'- gAUCGCggCCUgCGuguucacgucAUaGACGCCGCUGGc -3'
miRNA:   3'- -UAGCGuaGGAgGU----------UA-CUGCGGCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.