miRNA display CGI


Results 1 - 20 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12814 3' -66.8 NC_003387.1 + 47574 0.66 0.238903
Target:  5'- aCUGCa-CCgaCCGgCGCCGAGCGCCc- -3'
miRNA:   3'- -GGCGgcGGg-GGCgGCGGCUCGUGGug -5'
12814 3' -66.8 NC_003387.1 + 23501 0.66 0.238903
Target:  5'- aUCGUgCGCaCCuuGCCGUCGAugcGCACCuGCu -3'
miRNA:   3'- -GGCG-GCG-GGggCGGCGGCU---CGUGG-UG- -5'
12814 3' -66.8 NC_003387.1 + 16508 0.66 0.238903
Target:  5'- gCGaCGaCCUCGauuaCGCCGAgGCGCCACa -3'
miRNA:   3'- gGCgGCgGGGGCg---GCGGCU-CGUGGUG- -5'
12814 3' -66.8 NC_003387.1 + 8063 0.66 0.238903
Target:  5'- aCCGgCaGCCCCUcgGCCaggaucGCCGAG-GCCGCg -3'
miRNA:   3'- -GGCgG-CGGGGG--CGG------CGGCUCgUGGUG- -5'
12814 3' -66.8 NC_003387.1 + 35243 0.66 0.238903
Target:  5'- gUCGCgGCCa-UGCCGCCGGgaucguccuuGCugCGCa -3'
miRNA:   3'- -GGCGgCGGggGCGGCGGCU----------CGugGUG- -5'
12814 3' -66.8 NC_003387.1 + 2284 0.66 0.238328
Target:  5'- aCGUCGUCCUCGCuggcguaCGCCGAGgCgacgaucuGCCGCc -3'
miRNA:   3'- gGCGGCGGGGGCG-------GCGGCUC-G--------UGGUG- -5'
12814 3' -66.8 NC_003387.1 + 3017 0.66 0.238328
Target:  5'- gCGuuGCUUCgGCacguucaUGCCGGGCugCACg -3'
miRNA:   3'- gGCggCGGGGgCG-------GCGGCUCGugGUG- -5'
12814 3' -66.8 NC_003387.1 + 19043 0.66 0.237754
Target:  5'- gUCGCCGagucgaggucgaCCaUCGCCGCC-AGgGCCACg -3'
miRNA:   3'- -GGCGGCg-----------GG-GGCGGCGGcUCgUGGUG- -5'
12814 3' -66.8 NC_003387.1 + 9538 0.66 0.237754
Target:  5'- gCGgUGCCUgcgcaagCCGCCGCCGggguggauucgccAGCACgCGCa -3'
miRNA:   3'- gGCgGCGGG-------GGCGGCGGC-------------UCGUG-GUG- -5'
12814 3' -66.8 NC_003387.1 + 36371 0.66 0.235469
Target:  5'- uUGUCcaaGCCCUCGgCGCCGGGUugcucaguagcgaacACCACu -3'
miRNA:   3'- gGCGG---CGGGGGCgGCGGCUCG---------------UGGUG- -5'
12814 3' -66.8 NC_003387.1 + 8695 0.66 0.233203
Target:  5'- gCCGCUGCCgaCCGaCGUCGAcgaGCCGCu -3'
miRNA:   3'- -GGCGGCGGg-GGCgGCGGCUcg-UGGUG- -5'
12814 3' -66.8 NC_003387.1 + 8134 0.66 0.233203
Target:  5'- gCUGCUGUCCCgGCCGggcAGCgACCGCg -3'
miRNA:   3'- -GGCGGCGGGGgCGGCggcUCG-UGGUG- -5'
12814 3' -66.8 NC_003387.1 + 36076 0.66 0.233203
Target:  5'- -aGCCuGCaCCCCGaggcgcaCGCCGAGUGCaugaGCa -3'
miRNA:   3'- ggCGG-CG-GGGGCg------GCGGCUCGUGg---UG- -5'
12814 3' -66.8 NC_003387.1 + 4794 0.66 0.233203
Target:  5'- gCGUCGUgCCCaugccuGCCGCCGAcCAgCGCg -3'
miRNA:   3'- gGCGGCGgGGG------CGGCGGCUcGUgGUG- -5'
12814 3' -66.8 NC_003387.1 + 52256 0.66 0.233203
Target:  5'- -aGCuCGCgCCgGUCGCCGucGGCcGCCGCg -3'
miRNA:   3'- ggCG-GCGgGGgCGGCGGC--UCG-UGGUG- -5'
12814 3' -66.8 NC_003387.1 + 28989 0.66 0.233203
Target:  5'- cCCGaCCGCUggaUCGCCugcGCCGAGUcguucGCCGCc -3'
miRNA:   3'- -GGC-GGCGGg--GGCGG---CGGCUCG-----UGGUG- -5'
12814 3' -66.8 NC_003387.1 + 43500 0.66 0.233203
Target:  5'- cCCG-CGCCCCCaccaggaaaGCgCGCgGGGUGCCGg -3'
miRNA:   3'- -GGCgGCGGGGG---------CG-GCGgCUCGUGGUg -5'
12814 3' -66.8 NC_003387.1 + 49301 0.66 0.227619
Target:  5'- uCUGCUGCgUCa--UGCCGGGCACCAUc -3'
miRNA:   3'- -GGCGGCGgGGgcgGCGGCUCGUGGUG- -5'
12814 3' -66.8 NC_003387.1 + 47949 0.66 0.227619
Target:  5'- aCGCCGUgUggGCCGCgaAGCACCGCg -3'
miRNA:   3'- gGCGGCGgGggCGGCGgcUCGUGGUG- -5'
12814 3' -66.8 NC_003387.1 + 28280 0.66 0.227619
Target:  5'- -gGCCGCCaaggcucaaCUGCaCGCCuGGGCACCc- -3'
miRNA:   3'- ggCGGCGGg--------GGCG-GCGG-CUCGUGGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.