miRNA display CGI


Results 21 - 40 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12814 3' -66.8 NC_003387.1 + 47949 0.66 0.227619
Target:  5'- aCGCCGUgUggGCCGCgaAGCACCGCg -3'
miRNA:   3'- gGCGGCGgGggCGGCGgcUCGUGGUG- -5'
12814 3' -66.8 NC_003387.1 + 49301 0.66 0.227619
Target:  5'- uCUGCUGCgUCa--UGCCGGGCACCAUc -3'
miRNA:   3'- -GGCGGCGgGGgcgGCGGCUCGUGGUG- -5'
12814 3' -66.8 NC_003387.1 + 28280 0.66 0.227619
Target:  5'- -gGCCGCCaaggcucaaCUGCaCGCCuGGGCACCc- -3'
miRNA:   3'- ggCGGCGGg--------GGCG-GCGG-CUCGUGGug -5'
12814 3' -66.8 NC_003387.1 + 27851 0.66 0.222148
Target:  5'- gCGCaGCCaCCGCCcgagGUCGAGCcaGCCACc -3'
miRNA:   3'- gGCGgCGGgGGCGG----CGGCUCG--UGGUG- -5'
12814 3' -66.8 NC_003387.1 + 13834 0.66 0.222148
Target:  5'- gCGCCaccaGCCCuuGCCGagCGGGgGCuCACa -3'
miRNA:   3'- gGCGG----CGGGggCGGCg-GCUCgUG-GUG- -5'
12814 3' -66.8 NC_003387.1 + 7560 0.66 0.222148
Target:  5'- gCCGgUGCCUgcucacgcgaCCaCCuCCGAGCGCCGCg -3'
miRNA:   3'- -GGCgGCGGG----------GGcGGcGGCUCGUGGUG- -5'
12814 3' -66.8 NC_003387.1 + 22220 0.66 0.222147
Target:  5'- cUCGCgGCCCCgGCC-CCG-GCAauuUCACc -3'
miRNA:   3'- -GGCGgCGGGGgCGGcGGCuCGU---GGUG- -5'
12814 3' -66.8 NC_003387.1 + 24518 0.66 0.221607
Target:  5'- gCCGCaGCCCguuCCGCCaccuuggcgagggGCCGAGCGaaACu -3'
miRNA:   3'- -GGCGgCGGG---GGCGG-------------CGGCUCGUggUG- -5'
12814 3' -66.8 NC_003387.1 + 42402 0.66 0.221607
Target:  5'- gCCGCgGCUgauucccuugCCCGCguccuggccugcgCGCUGAGCGCC-Cg -3'
miRNA:   3'- -GGCGgCGG----------GGGCG-------------GCGGCUCGUGGuG- -5'
12814 3' -66.8 NC_003387.1 + 22652 0.66 0.216789
Target:  5'- aUGCuCGCCCCgGCgGCCGucagGGCGCg-- -3'
miRNA:   3'- gGCG-GCGGGGgCGgCGGC----UCGUGgug -5'
12814 3' -66.8 NC_003387.1 + 23674 0.66 0.216789
Target:  5'- gCCGaaaCGCCCCCcgGCgugaGCCGAGgGgCGCu -3'
miRNA:   3'- -GGCg--GCGGGGG--CGg---CGGCUCgUgGUG- -5'
12814 3' -66.8 NC_003387.1 + 6591 0.66 0.216789
Target:  5'- aCCGCgGCaCCUCa-CGcCCGAGCcACCGCa -3'
miRNA:   3'- -GGCGgCG-GGGGcgGC-GGCUCG-UGGUG- -5'
12814 3' -66.8 NC_003387.1 + 31132 0.66 0.216789
Target:  5'- gCGCCGCgucggCCUCGCUgauGCCGcGCGCCu- -3'
miRNA:   3'- gGCGGCG-----GGGGCGG---CGGCuCGUGGug -5'
12814 3' -66.8 NC_003387.1 + 21459 0.66 0.216789
Target:  5'- aC-CCGgCCCCGCUGgCGcAGC-CCGCg -3'
miRNA:   3'- gGcGGCgGGGGCGGCgGC-UCGuGGUG- -5'
12814 3' -66.8 NC_003387.1 + 6969 0.66 0.216789
Target:  5'- -gGCCGCCCUCGUCGa-GGGgACgACa -3'
miRNA:   3'- ggCGGCGGGGGCGGCggCUCgUGgUG- -5'
12814 3' -66.8 NC_003387.1 + 39823 0.66 0.216789
Target:  5'- -gGCaC-CCCCaCGCCGUCGAG-GCCGCu -3'
miRNA:   3'- ggCG-GcGGGG-GCGGCGGCUCgUGGUG- -5'
12814 3' -66.8 NC_003387.1 + 29599 0.66 0.216789
Target:  5'- aCCGuuGCCggugagggUCG-CGCCGGGCGCCAg -3'
miRNA:   3'- -GGCggCGGg-------GGCgGCGGCUCGUGGUg -5'
12814 3' -66.8 NC_003387.1 + 18680 0.66 0.216259
Target:  5'- -gGCCGCCCCacaCGCCGaCCaGgugcgggucgcgcAGCGCCAg -3'
miRNA:   3'- ggCGGCGGGG---GCGGC-GG-C-------------UCGUGGUg -5'
12814 3' -66.8 NC_003387.1 + 32853 0.66 0.211541
Target:  5'- -gGCgGUUCCgCGUCGCCGAcuGCGCCGa -3'
miRNA:   3'- ggCGgCGGGG-GCGGCGGCU--CGUGGUg -5'
12814 3' -66.8 NC_003387.1 + 5772 0.66 0.211541
Target:  5'- aCCgGCCGCgCUCGCCGCgGAucGaCACCuCg -3'
miRNA:   3'- -GG-CGGCGgGGGCGGCGgCU--C-GUGGuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.