miRNA display CGI


Results 1 - 20 of 269 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12814 3' -66.8 NC_003387.1 + 133 0.71 0.088483
Target:  5'- gCgGUCGCCCUcgcgauccgCGCCGCCGAGCuggGCCuGCu -3'
miRNA:   3'- -GgCGGCGGGG---------GCGGCGGCUCG---UGG-UG- -5'
12814 3' -66.8 NC_003387.1 + 245 0.67 0.201373
Target:  5'- -aGCCGCCCCaauGuuGUCGAgggugucaGUGCCACc -3'
miRNA:   3'- ggCGGCGGGGg--CggCGGCU--------CGUGGUG- -5'
12814 3' -66.8 NC_003387.1 + 453 0.69 0.134402
Target:  5'- gUCGCCGCCgCgGCgGCCGAcgGCgACCGg -3'
miRNA:   3'- -GGCGGCGGgGgCGgCGGCU--CG-UGGUg -5'
12814 3' -66.8 NC_003387.1 + 981 0.69 0.137905
Target:  5'- aUGCCGCCgCCGaggCGCCGAccggggucggauGCGCUGCg -3'
miRNA:   3'- gGCGGCGGgGGCg--GCGGCU------------CGUGGUG- -5'
12814 3' -66.8 NC_003387.1 + 1455 0.67 0.186919
Target:  5'- gUCGUCGUCCUCGUcgagguCGUCGAGgGCCAg -3'
miRNA:   3'- -GGCGGCGGGGGCG------GCGGCUCgUGGUg -5'
12814 3' -66.8 NC_003387.1 + 1740 0.67 0.173387
Target:  5'- aCGaaaaCGCCCCCgGCCGCUaucggcucggGGGCGCUucGCg -3'
miRNA:   3'- gGCg---GCGGGGG-CGGCGG----------CUCGUGG--UG- -5'
12814 3' -66.8 NC_003387.1 + 2030 0.82 0.013978
Target:  5'- gCCGCCgacgGCCgCCGUCGCCGAGCugGCCGCg -3'
miRNA:   3'- -GGCGG----CGGgGGCGGCGGCUCG--UGGUG- -5'
12814 3' -66.8 NC_003387.1 + 2284 0.66 0.238328
Target:  5'- aCGUCGUCCUCGCuggcguaCGCCGAGgCgacgaucuGCCGCc -3'
miRNA:   3'- gGCGGCGGGGGCG-------GCGGCUC-G--------UGGUG- -5'
12814 3' -66.8 NC_003387.1 + 2351 0.8 0.017417
Target:  5'- -gGCCGCCgUCGgCGUCGAGCGCCACg -3'
miRNA:   3'- ggCGGCGGgGGCgGCGGCUCGUGGUG- -5'
12814 3' -66.8 NC_003387.1 + 2877 0.67 0.189735
Target:  5'- cUCGUCGUacaucggcaggaaCUCGCuCGCCGGGCGCgGCa -3'
miRNA:   3'- -GGCGGCGg------------GGGCG-GCGGCUCGUGgUG- -5'
12814 3' -66.8 NC_003387.1 + 3017 0.66 0.238328
Target:  5'- gCGuuGCUUCgGCacguucaUGCCGGGCugCACg -3'
miRNA:   3'- gGCggCGGGGgCG-------GCGGCUCGugGUG- -5'
12814 3' -66.8 NC_003387.1 + 3271 0.69 0.133023
Target:  5'- gCCGCCGaaauggacgacgaCCCCgacacgGCCGCCGAcucggGCGCCGa -3'
miRNA:   3'- -GGCGGCg------------GGGG------CGGCGGCU-----CGUGGUg -5'
12814 3' -66.8 NC_003387.1 + 3275 0.69 0.134402
Target:  5'- uUGCCGUCUgUGCgUGCCGGGUACUGCu -3'
miRNA:   3'- gGCGGCGGGgGCG-GCGGCUCGUGGUG- -5'
12814 3' -66.8 NC_003387.1 + 3472 0.7 0.112091
Target:  5'- aUGCgCGUcaCCCCGgCGUCGAGCAgCCGCu -3'
miRNA:   3'- gGCG-GCG--GGGGCgGCGGCUCGU-GGUG- -5'
12814 3' -66.8 NC_003387.1 + 3523 0.77 0.032686
Target:  5'- gCGCCaguGCCCCCGCCGCCGccccaGGCgGCUGCu -3'
miRNA:   3'- gGCGG---CGGGGGCGGCGGC-----UCG-UGGUG- -5'
12814 3' -66.8 NC_003387.1 + 3550 0.71 0.100947
Target:  5'- gCCGCCGCCugcgcgaccgCCUGCgCGCUGGuguGCACCGa -3'
miRNA:   3'- -GGCGGCGG----------GGGCG-GCGGCU---CGUGGUg -5'
12814 3' -66.8 NC_003387.1 + 3655 0.7 0.121194
Target:  5'- gCGCCGCgagCCUGcCCGgUGAGCGCCAg -3'
miRNA:   3'- gGCGGCGg--GGGC-GGCgGCUCGUGGUg -5'
12814 3' -66.8 NC_003387.1 + 3889 0.7 0.112091
Target:  5'- aCGCCGUgCgUCG-CGCCGAGCAgCACg -3'
miRNA:   3'- gGCGGCGgG-GGCgGCGGCUCGUgGUG- -5'
12814 3' -66.8 NC_003387.1 + 3898 0.68 0.160736
Target:  5'- gCCGCUGCCcgacCCUGaCCGCCuGGGUGCUAa -3'
miRNA:   3'- -GGCGGCGG----GGGC-GGCGG-CUCGUGGUg -5'
12814 3' -66.8 NC_003387.1 + 3931 0.75 0.045162
Target:  5'- gCCGCCGCCgCggcgaucaGCggcgagcuggcugCGCCGAGCACCGCg -3'
miRNA:   3'- -GGCGGCGGgGg-------CG-------------GCGGCUCGUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.