miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12814 5' -57.9 NC_003387.1 + 21603 0.66 0.521901
Target:  5'- cGGGCGGCGCCcaccuGGcgcuCGGGggUGCGUc -3'
miRNA:   3'- -UUCGCCGUGG-----UCau--GCCCuaGCGCAu -5'
12814 5' -57.9 NC_003387.1 + 24768 0.66 0.521901
Target:  5'- -cGCGGUcgaucgccacgaGCCGGaaccgcuCGGGGUCGCGg- -3'
miRNA:   3'- uuCGCCG------------UGGUCau-----GCCCUAGCGCau -5'
12814 5' -57.9 NC_003387.1 + 50083 0.66 0.51136
Target:  5'- -cGCcGCGCCGGUGCGGcuUCGCa-- -3'
miRNA:   3'- uuCGcCGUGGUCAUGCCcuAGCGcau -5'
12814 5' -57.9 NC_003387.1 + 34993 0.66 0.50091
Target:  5'- uGGCGGCccgGCCGGgcCGGGG-CGCa-- -3'
miRNA:   3'- uUCGCCG---UGGUCauGCCCUaGCGcau -5'
12814 5' -57.9 NC_003387.1 + 34901 0.66 0.490554
Target:  5'- cGGCGGCACCAagGCGGGcaaucUCGaaCGUAc -3'
miRNA:   3'- uUCGCCGUGGUcaUGCCCu----AGC--GCAU- -5'
12814 5' -57.9 NC_003387.1 + 1379 0.67 0.480299
Target:  5'- -cGuCGGCGCuCAGcggguCGGGGUCGCGc- -3'
miRNA:   3'- uuC-GCCGUG-GUCau---GCCCUAGCGCau -5'
12814 5' -57.9 NC_003387.1 + 49439 0.67 0.47015
Target:  5'- cGGCGGC-CguGU-CGGGGUCGuCGUc -3'
miRNA:   3'- uUCGCCGuGguCAuGCCCUAGC-GCAu -5'
12814 5' -57.9 NC_003387.1 + 16088 0.67 0.460111
Target:  5'- cGGgGGCGCC-GU-CGGGcAUCGCGg- -3'
miRNA:   3'- uUCgCCGUGGuCAuGCCC-UAGCGCau -5'
12814 5' -57.9 NC_003387.1 + 22170 0.67 0.460111
Target:  5'- cAGCGGC-CCAG-GCGGGggCgGCGg- -3'
miRNA:   3'- uUCGCCGuGGUCaUGCCCuaG-CGCau -5'
12814 5' -57.9 NC_003387.1 + 37381 0.67 0.440382
Target:  5'- cGGCGGCGCCccgcugucGGUAuCGGGcauuuucaacGUCGCGa- -3'
miRNA:   3'- uUCGCCGUGG--------UCAU-GCCC----------UAGCGCau -5'
12814 5' -57.9 NC_003387.1 + 45172 0.67 0.4307
Target:  5'- nGAGCaGGCACCGGcaaGaGGAUCGgGUGu -3'
miRNA:   3'- -UUCG-CCGUGGUCaugC-CCUAGCgCAU- -5'
12814 5' -57.9 NC_003387.1 + 11575 0.68 0.40242
Target:  5'- --uCGGCACCAaggcGUACGGcGUCGCGa- -3'
miRNA:   3'- uucGCCGUGGU----CAUGCCcUAGCGCau -5'
12814 5' -57.9 NC_003387.1 + 45149 0.69 0.3666
Target:  5'- -cGCGGCGCuCGGa--GGuGGUCGCGUGa -3'
miRNA:   3'- uuCGCCGUG-GUCaugCC-CUAGCGCAU- -5'
12814 5' -57.9 NC_003387.1 + 36993 0.69 0.349532
Target:  5'- -uGCGGCugauCCGGcGCGGGuucCGCGUGu -3'
miRNA:   3'- uuCGCCGu---GGUCaUGCCCua-GCGCAU- -5'
12814 5' -57.9 NC_003387.1 + 43852 0.69 0.349532
Target:  5'- gGGGCGGUgcACCAGUGCuauAUCGCGUGg -3'
miRNA:   3'- -UUCGCCG--UGGUCAUGcccUAGCGCAU- -5'
12814 5' -57.9 NC_003387.1 + 30825 1.04 0.000975
Target:  5'- gAAGCGGCACCAGUACGGGAUCGCGUAc -3'
miRNA:   3'- -UUCGCCGUGGUCAUGCCCUAGCGCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.