miRNA display CGI


Results 1 - 20 of 131 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12815 3' -58.7 NC_003387.1 + 11019 0.66 0.554153
Target:  5'- gGCCGCCuucgucggcGCCGCgaCGcCGGGucggGUUGACg -3'
miRNA:   3'- -CGGCGG---------UGGCGg-GU-GCCUua--CAGCUG- -5'
12815 3' -58.7 NC_003387.1 + 26740 0.66 0.554153
Target:  5'- aUCGCCuugACCGCCgC-CGGAAccUCGGCg -3'
miRNA:   3'- cGGCGG---UGGCGG-GuGCCUUacAGCUG- -5'
12815 3' -58.7 NC_003387.1 + 2304 0.66 0.554153
Target:  5'- cGCCGaggcgacgauCUGCCGCCCGacguacagcuCGGcGGUGUCGAg -3'
miRNA:   3'- -CGGC----------GGUGGCGGGU----------GCC-UUACAGCUg -5'
12815 3' -58.7 NC_003387.1 + 10036 0.66 0.554153
Target:  5'- aGCCGaaGCgCGCCgAgGGcgcGGUGUCGGCc -3'
miRNA:   3'- -CGGCggUG-GCGGgUgCC---UUACAGCUG- -5'
12815 3' -58.7 NC_003387.1 + 10849 0.66 0.554153
Target:  5'- cGCCaGCuCGCCGaCCGCGGucUGcCGAUc -3'
miRNA:   3'- -CGG-CG-GUGGCgGGUGCCuuACaGCUG- -5'
12815 3' -58.7 NC_003387.1 + 1578 0.66 0.543673
Target:  5'- -gCGCCuaaCGCCCugGcg--GUCGACa -3'
miRNA:   3'- cgGCGGug-GCGGGugCcuuaCAGCUG- -5'
12815 3' -58.7 NC_003387.1 + 26778 0.66 0.543673
Target:  5'- gGCCGCCgaaggcACCGCagCCAUGuGggUGUgGGg -3'
miRNA:   3'- -CGGCGG------UGGCG--GGUGC-CuuACAgCUg -5'
12815 3' -58.7 NC_003387.1 + 30559 0.66 0.543673
Target:  5'- aCCGCCGCCGCggccgguacgcgCCgugccgcgaguGCGGGuacGUCGGCc -3'
miRNA:   3'- cGGCGGUGGCG------------GG-----------UGCCUua-CAGCUG- -5'
12815 3' -58.7 NC_003387.1 + 31153 0.66 0.543673
Target:  5'- uGCCGCgCGCCugGgCCACGGucUGcaCGACg -3'
miRNA:   3'- -CGGCG-GUGG--CgGGUGCCuuACa-GCUG- -5'
12815 3' -58.7 NC_003387.1 + 18921 0.66 0.543673
Target:  5'- -aUGcCCugCGCCuCAUcGggUGUCGGCa -3'
miRNA:   3'- cgGC-GGugGCGG-GUGcCuuACAGCUG- -5'
12815 3' -58.7 NC_003387.1 + 52303 0.66 0.542628
Target:  5'- cGCCauaaGCCACCGCCagCACagccucgGGggUGcgagugcacUCGACg -3'
miRNA:   3'- -CGG----CGGUGGCGG--GUG-------CCuuAC---------AGCUG- -5'
12815 3' -58.7 NC_003387.1 + 458 0.66 0.533257
Target:  5'- cGCCGCgGCgGCCgACGGcgac-CGGCg -3'
miRNA:   3'- -CGGCGgUGgCGGgUGCCuuacaGCUG- -5'
12815 3' -58.7 NC_003387.1 + 52269 0.66 0.533257
Target:  5'- cGCCGUCgGCCG-CCGCGGcg-G-CGACa -3'
miRNA:   3'- -CGGCGG-UGGCgGGUGCCuuaCaGCUG- -5'
12815 3' -58.7 NC_003387.1 + 35325 0.66 0.533257
Target:  5'- cGgCGUCGCCGgUCGCGGGAauuUCGGCc -3'
miRNA:   3'- -CgGCGGUGGCgGGUGCCUUac-AGCUG- -5'
12815 3' -58.7 NC_003387.1 + 37744 0.66 0.533257
Target:  5'- -gCGCCACCGUgCgcgGCGGGAUcuugccGUCGAa -3'
miRNA:   3'- cgGCGGUGGCGgG---UGCCUUA------CAGCUg -5'
12815 3' -58.7 NC_003387.1 + 31068 0.66 0.533257
Target:  5'- uGCUcgGCCGCCG-CCGCGG----UCGACg -3'
miRNA:   3'- -CGG--CGGUGGCgGGUGCCuuacAGCUG- -5'
12815 3' -58.7 NC_003387.1 + 43953 0.66 0.530147
Target:  5'- cGCCGCCGCacggcgaagGCCCgcauggcgaagcugACGGuucacGUCGACc -3'
miRNA:   3'- -CGGCGGUGg--------CGGG--------------UGCCuua--CAGCUG- -5'
12815 3' -58.7 NC_003387.1 + 1295 0.66 0.522915
Target:  5'- -gCGCCucgaCGCCCugGCGGGcgacGUCGACg -3'
miRNA:   3'- cgGCGGug--GCGGG--UGCCUua--CAGCUG- -5'
12815 3' -58.7 NC_003387.1 + 7824 0.66 0.522915
Target:  5'- gGCgGCCGaggUCGCCCggcgcgcagGCGGAAUcGcCGACg -3'
miRNA:   3'- -CGgCGGU---GGCGGG---------UGCCUUA-CaGCUG- -5'
12815 3' -58.7 NC_003387.1 + 46608 0.66 0.522915
Target:  5'- aGCCGCUGCCGCgCAUGucgcaGGUGUuCGAg -3'
miRNA:   3'- -CGGCGGUGGCGgGUGCc----UUACA-GCUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.