miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12815 3' -58.7 NC_003387.1 + 30684 1.12 0.000297
Target:  5'- cGCCGCCACCGCCCACGGAAUGUCGACg -3'
miRNA:   3'- -CGGCGGUGGCGGGUGCCUUACAGCUG- -5'
12815 3' -58.7 NC_003387.1 + 17057 0.85 0.030268
Target:  5'- cGCUcaGCCACCGCCCGCGGucgagGUCGGCc -3'
miRNA:   3'- -CGG--CGGUGGCGGGUGCCuua--CAGCUG- -5'
12815 3' -58.7 NC_003387.1 + 34421 0.75 0.138116
Target:  5'- gGgCGCCACCG-CCGCGGccggGUCGGCg -3'
miRNA:   3'- -CgGCGGUGGCgGGUGCCuua-CAGCUG- -5'
12815 3' -58.7 NC_003387.1 + 50674 0.74 0.160994
Target:  5'- cGCCGCCACCGCggccagcucggcgaCgGCGGcc-GUCGGCg -3'
miRNA:   3'- -CGGCGGUGGCG--------------GgUGCCuuaCAGCUG- -5'
12815 3' -58.7 NC_003387.1 + 6605 0.74 0.180458
Target:  5'- cGCCcgaGCCACCGCagCAgcCGGAacAUGUCGGCg -3'
miRNA:   3'- -CGG---CGGUGGCGg-GU--GCCU--UACAGCUG- -5'
12815 3' -58.7 NC_003387.1 + 18972 0.74 0.185274
Target:  5'- cGCCGCCGuuGCCCuugcCGGggUGcCG-Cu -3'
miRNA:   3'- -CGGCGGUggCGGGu---GCCuuACaGCuG- -5'
12815 3' -58.7 NC_003387.1 + 26924 0.73 0.190203
Target:  5'- gGCCGCCACCGaggCCGCcgagcggccGaGAAUGUCGAg -3'
miRNA:   3'- -CGGCGGUGGCg--GGUG---------C-CUUACAGCUg -5'
12815 3' -58.7 NC_003387.1 + 33590 0.73 0.190203
Target:  5'- --aGCCACCGCCCGguCGGGucgAUGaUCGACu -3'
miRNA:   3'- cggCGGUGGCGGGU--GCCU---UAC-AGCUG- -5'
12815 3' -58.7 NC_003387.1 + 37313 0.73 0.195247
Target:  5'- aCCGCCACCGCCaguuacgccggUGCGGGuacggGUCGAUc -3'
miRNA:   3'- cGGCGGUGGCGG-----------GUGCCUua---CAGCUG- -5'
12815 3' -58.7 NC_003387.1 + 1679 0.73 0.205686
Target:  5'- gGCCGgUACCGacaCCGCGGcgGcgGUCGACu -3'
miRNA:   3'- -CGGCgGUGGCg--GGUGCC--UuaCAGCUG- -5'
12815 3' -58.7 NC_003387.1 + 41220 0.73 0.205686
Target:  5'- gGCCGacgaucguaggCACCGCCCACGaGGcauUGUCGGCc -3'
miRNA:   3'- -CGGCg----------GUGGCGGGUGC-CUu--ACAGCUG- -5'
12815 3' -58.7 NC_003387.1 + 25074 0.72 0.222249
Target:  5'- uGCCGCCGCCGuugaCCCACGa---GUCGAa -3'
miRNA:   3'- -CGGCGGUGGC----GGGUGCcuuaCAGCUg -5'
12815 3' -58.7 NC_003387.1 + 6765 0.72 0.228017
Target:  5'- cGCaCGCC-UCGCCCuugcGCGGGccGUCGGCg -3'
miRNA:   3'- -CG-GCGGuGGCGGG----UGCCUuaCAGCUG- -5'
12815 3' -58.7 NC_003387.1 + 30798 0.72 0.233911
Target:  5'- cCCGCCGCCGagcaCCAC--AAUGUCGAUg -3'
miRNA:   3'- cGGCGGUGGCg---GGUGccUUACAGCUG- -5'
12815 3' -58.7 NC_003387.1 + 26157 0.72 0.233911
Target:  5'- cCCGgCACCGCCCGCaaGGGcgucAUGUCGuCg -3'
miRNA:   3'- cGGCgGUGGCGGGUG--CCU----UACAGCuG- -5'
12815 3' -58.7 NC_003387.1 + 3139 0.72 0.239933
Target:  5'- uGCCagGCCACCGCCCggcaGCGGGcgcaccUCGGCg -3'
miRNA:   3'- -CGG--CGGUGGCGGG----UGCCUuac---AGCUG- -5'
12815 3' -58.7 NC_003387.1 + 50971 0.72 0.246084
Target:  5'- cGCCGCCGCCggGCUCAUGc--UGUCGAUc -3'
miRNA:   3'- -CGGCGGUGG--CGGGUGCcuuACAGCUG- -5'
12815 3' -58.7 NC_003387.1 + 15817 0.72 0.250467
Target:  5'- cGCUGUCGCCGCCgguugugacgccgaCGCGGugcccGUCGGCg -3'
miRNA:   3'- -CGGCGGUGGCGG--------------GUGCCuua--CAGCUG- -5'
12815 3' -58.7 NC_003387.1 + 35707 0.71 0.271999
Target:  5'- aGCCGCCGCgguuugauuagCGCCCGCucGGg--GUCGAUg -3'
miRNA:   3'- -CGGCGGUG-----------GCGGGUG--CCuuaCAGCUG- -5'
12815 3' -58.7 NC_003387.1 + 43595 0.71 0.271999
Target:  5'- uGCCGUCAgUGCCCuuGagcaccuuGAAUGUCGGCu -3'
miRNA:   3'- -CGGCGGUgGCGGGugC--------CUUACAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.