miRNA display CGI


Results 21 - 40 of 131 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12815 3' -58.7 NC_003387.1 + 46608 0.66 0.522915
Target:  5'- aGCCGCUGCCGCgCAUGucgcaGGUGUuCGAg -3'
miRNA:   3'- -CGGCGGUGGCGgGUGCc----UUACA-GCUg -5'
12815 3' -58.7 NC_003387.1 + 44467 0.66 0.522915
Target:  5'- aGgCGCUGCaCGCCCGCGuGAcgGgUGACc -3'
miRNA:   3'- -CgGCGGUG-GCGGGUGC-CUuaCaGCUG- -5'
12815 3' -58.7 NC_003387.1 + 16748 0.66 0.522915
Target:  5'- cGUCGUCGCCGCCgAgGGccuccUCGACc -3'
miRNA:   3'- -CGGCGGUGGCGGgUgCCuuac-AGCUG- -5'
12815 3' -58.7 NC_003387.1 + 15392 0.66 0.521884
Target:  5'- cCCGCgGCgggggcuCGUCCACGGcacGUCGGCg -3'
miRNA:   3'- cGGCGgUG-------GCGGGUGCCuuaCAGCUG- -5'
12815 3' -58.7 NC_003387.1 + 45878 0.66 0.51265
Target:  5'- uGCgCGCCGCgGCCgaGCGGGcgaUCGACc -3'
miRNA:   3'- -CG-GCGGUGgCGGg-UGCCUuacAGCUG- -5'
12815 3' -58.7 NC_003387.1 + 47770 0.66 0.51265
Target:  5'- gGCCGCCGCCucguucaucGUCCACaGcuugcgcggGUCGACc -3'
miRNA:   3'- -CGGCGGUGG---------CGGGUGcCuua------CAGCUG- -5'
12815 3' -58.7 NC_003387.1 + 48453 0.66 0.51265
Target:  5'- gGCCuCCAUCGCCCGCGaAAUcucuugCGGCg -3'
miRNA:   3'- -CGGcGGUGGCGGGUGCcUUAca----GCUG- -5'
12815 3' -58.7 NC_003387.1 + 982 0.66 0.51265
Target:  5'- uGCCGCCGCCGaggcgCCGacCGGg--GUCGGa -3'
miRNA:   3'- -CGGCGGUGGCg----GGU--GCCuuaCAGCUg -5'
12815 3' -58.7 NC_003387.1 + 24950 0.66 0.502469
Target:  5'- gGCCGCCugaUGgCCugGGucgGUUGGCa -3'
miRNA:   3'- -CGGCGGug-GCgGGugCCuuaCAGCUG- -5'
12815 3' -58.7 NC_003387.1 + 1376 0.66 0.502469
Target:  5'- cGCCGUCGgCGCUCAgCGGGucgggGUCGcGCu -3'
miRNA:   3'- -CGGCGGUgGCGGGU-GCCUua---CAGC-UG- -5'
12815 3' -58.7 NC_003387.1 + 24102 0.67 0.492377
Target:  5'- uGUCGgCAUCGCCUggcauGCGGGc-GUCGGCa -3'
miRNA:   3'- -CGGCgGUGGCGGG-----UGCCUuaCAGCUG- -5'
12815 3' -58.7 NC_003387.1 + 9244 0.67 0.492377
Target:  5'- uGCCGCaugaACCGCCCcgACaGGAcGUCGcCg -3'
miRNA:   3'- -CGGCGg---UGGCGGG--UGcCUUaCAGCuG- -5'
12815 3' -58.7 NC_003387.1 + 35404 0.67 0.492377
Target:  5'- -gCGCCACCGCaggucaGCGGuGUGaUUGGCg -3'
miRNA:   3'- cgGCGGUGGCGgg----UGCCuUAC-AGCUG- -5'
12815 3' -58.7 NC_003387.1 + 30955 0.67 0.489368
Target:  5'- cGCCGCUgGCUGCCCA-GGAauccccacagcaccGUGUCG-Ca -3'
miRNA:   3'- -CGGCGG-UGGCGGGUgCCU--------------UACAGCuG- -5'
12815 3' -58.7 NC_003387.1 + 31404 0.67 0.48238
Target:  5'- cGCCGUCAgccCCGCUCACGcGccacUGcUCGACg -3'
miRNA:   3'- -CGGCGGU---GGCGGGUGC-Cuu--AC-AGCUG- -5'
12815 3' -58.7 NC_003387.1 + 23851 0.67 0.48238
Target:  5'- cGgCGCCguGCCGCUCGCGGuaccaGUcCGACc -3'
miRNA:   3'- -CgGCGG--UGGCGGGUGCCuua--CA-GCUG- -5'
12815 3' -58.7 NC_003387.1 + 11356 0.67 0.48238
Target:  5'- gGCCGUCACUGCagACGGccggGUCGuCg -3'
miRNA:   3'- -CGGCGGUGGCGggUGCCuua-CAGCuG- -5'
12815 3' -58.7 NC_003387.1 + 48811 0.67 0.48238
Target:  5'- gGCgGCCAUCGuCCCGCcGGucGUGcugcUCGGCg -3'
miRNA:   3'- -CGgCGGUGGC-GGGUG-CCu-UAC----AGCUG- -5'
12815 3' -58.7 NC_003387.1 + 7436 0.67 0.481386
Target:  5'- --aGCCAcagaugcCCGCCCgACGGg--GUCGGCg -3'
miRNA:   3'- cggCGGU-------GGCGGG-UGCCuuaCAGCUG- -5'
12815 3' -58.7 NC_003387.1 + 39021 0.67 0.476429
Target:  5'- cGCCGCCuggGCCGCgCuCGGGacgaacgccgacauaGcGUCGACg -3'
miRNA:   3'- -CGGCGG---UGGCGgGuGCCU---------------UaCAGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.