miRNA display CGI


Results 1 - 20 of 131 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12815 3' -58.7 NC_003387.1 + 1679 0.73 0.205686
Target:  5'- gGCCGgUACCGacaCCGCGGcgGcgGUCGACu -3'
miRNA:   3'- -CGGCgGUGGCg--GGUGCC--UuaCAGCUG- -5'
12815 3' -58.7 NC_003387.1 + 30041 0.68 0.424623
Target:  5'- cGCCGCCgucgacACCGCCCACGaGcgcgcccUGaCGGCc -3'
miRNA:   3'- -CGGCGG------UGGCGGGUGC-Cuu-----ACaGCUG- -5'
12815 3' -58.7 NC_003387.1 + 11142 0.68 0.433965
Target:  5'- aCCGCCGCgaucaaggCGCCUAUGGGcaacGUGaCGACu -3'
miRNA:   3'- cGGCGGUG--------GCGGGUGCCU----UACaGCUG- -5'
12815 3' -58.7 NC_003387.1 + 10849 0.66 0.554153
Target:  5'- cGCCaGCuCGCCGaCCGCGGucUGcCGAUc -3'
miRNA:   3'- -CGG-CG-GUGGCgGGUGCCuuACaGCUG- -5'
12815 3' -58.7 NC_003387.1 + 48098 0.7 0.300063
Target:  5'- cGCUGCCGCugCGCCCGCGGug-GcUCGcCg -3'
miRNA:   3'- -CGGCGGUG--GCGGGUGCCuuaC-AGCuG- -5'
12815 3' -58.7 NC_003387.1 + 13668 0.7 0.322544
Target:  5'- cGCCGagggCGCCGUCgACGcuAUGUCGGCg -3'
miRNA:   3'- -CGGCg---GUGGCGGgUGCcuUACAGCUG- -5'
12815 3' -58.7 NC_003387.1 + 8690 0.7 0.330312
Target:  5'- gGCaCGCCGCUGCCgACcGAc-GUCGACg -3'
miRNA:   3'- -CG-GCGGUGGCGGgUGcCUuaCAGCUG- -5'
12815 3' -58.7 NC_003387.1 + 44983 0.69 0.346259
Target:  5'- cGCCGCUGCCGCCgagGCGGugcUGUgaGGCa -3'
miRNA:   3'- -CGGCGGUGGCGGg--UGCCuu-ACAg-CUG- -5'
12815 3' -58.7 NC_003387.1 + 2042 0.69 0.371197
Target:  5'- cGCCGUCGCCGagcuggCCGCGGug-G-CGGCg -3'
miRNA:   3'- -CGGCGGUGGCg-----GGUGCCuuaCaGCUG- -5'
12815 3' -58.7 NC_003387.1 + 30230 0.68 0.41266
Target:  5'- cGCCGCCgagGCCGUcgcccgguacgacgCCGCGGuc-GUCGAg -3'
miRNA:   3'- -CGGCGG---UGGCG--------------GGUGCCuuaCAGCUg -5'
12815 3' -58.7 NC_003387.1 + 29426 0.69 0.371197
Target:  5'- gGCCGCCGCagcgGCCCGCGcg--GUCG-Cu -3'
miRNA:   3'- -CGGCGGUGg---CGGGUGCcuuaCAGCuG- -5'
12815 3' -58.7 NC_003387.1 + 17033 0.69 0.36275
Target:  5'- gGCgGCUGCCGCCCucgcCGGGcgucGUCGAg -3'
miRNA:   3'- -CGgCGGUGGCGGGu---GCCUua--CAGCUg -5'
12815 3' -58.7 NC_003387.1 + 3534 0.71 0.278812
Target:  5'- cCCGCCGCCGCCCcagGCGGc-UGcUCaGGCg -3'
miRNA:   3'- cGGCGGUGGCGGG---UGCCuuAC-AG-CUG- -5'
12815 3' -58.7 NC_003387.1 + 48150 0.68 0.406305
Target:  5'- aGCgCGCCACCgagGCCCGCGcg--GUCGcGCa -3'
miRNA:   3'- -CG-GCGGUGG---CGGGUGCcuuaCAGC-UG- -5'
12815 3' -58.7 NC_003387.1 + 4480 0.71 0.285759
Target:  5'- cCCGCCGCgaaggccgaGCCCGCGGAGgccccgcUCGACc -3'
miRNA:   3'- cGGCGGUGg--------CGGGUGCCUUac-----AGCUG- -5'
12815 3' -58.7 NC_003387.1 + 17872 0.69 0.354437
Target:  5'- gGCUGCucuCACCGCaaggcccgCGCGGGccGUCGACg -3'
miRNA:   3'- -CGGCG---GUGGCGg-------GUGCCUuaCAGCUG- -5'
12815 3' -58.7 NC_003387.1 + 641 0.68 0.406305
Target:  5'- cGCCGCCGCggcagcgaCGCCCGauGAAccauUCGACg -3'
miRNA:   3'- -CGGCGGUG--------GCGGGUgcCUUac--AGCUG- -5'
12815 3' -58.7 NC_003387.1 + 48730 0.68 0.428345
Target:  5'- cGCCGCCacgGCCGCCUcaauccuCGGGaacgucacgcacgcgGUGcUCGGCg -3'
miRNA:   3'- -CGGCGG---UGGCGGGu------GCCU---------------UAC-AGCUG- -5'
12815 3' -58.7 NC_003387.1 + 50465 0.71 0.292843
Target:  5'- aGCCGaCC-CCgGCCCGCGaGGUcGUCGGCa -3'
miRNA:   3'- -CGGC-GGuGG-CGGGUGCcUUA-CAGCUG- -5'
12815 3' -58.7 NC_003387.1 + 45060 0.7 0.329529
Target:  5'- gGUCGCCgagcgcgucgaggGCCGUCCugGGccGGUGUuCGGCg -3'
miRNA:   3'- -CGGCGG-------------UGGCGGGugCC--UUACA-GCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.