miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12815 5' -56.3 NC_003387.1 + 25815 0.66 0.664136
Target:  5'- gUGGCGgccugCucgGCGGCCUGGgcGgUGGCCu -3'
miRNA:   3'- gAUCGCa----G---UGCCGGACUa-UgACCGGc -5'
12815 5' -56.3 NC_003387.1 + 35709 0.66 0.664136
Target:  5'- -cGGCGaCgACGGCCUGccGCUGaCCGa -3'
miRNA:   3'- gaUCGCaG-UGCCGGACuaUGACcGGC- -5'
12815 5' -56.3 NC_003387.1 + 41181 0.66 0.653178
Target:  5'- -cAGUcagCACGGCCUGGUGCgcgaacagGGCg- -3'
miRNA:   3'- gaUCGca-GUGCCGGACUAUGa-------CCGgc -5'
12815 5' -56.3 NC_003387.1 + 41161 0.66 0.642201
Target:  5'- -gAGUGUCAgGGCgaG-UGC-GGCCGg -3'
miRNA:   3'- gaUCGCAGUgCCGgaCuAUGaCCGGC- -5'
12815 5' -56.3 NC_003387.1 + 151 0.66 0.642201
Target:  5'- --cGCGccgccgagCugGGCCU---GCUGGCCGa -3'
miRNA:   3'- gauCGCa-------GugCCGGAcuaUGACCGGC- -5'
12815 5' -56.3 NC_003387.1 + 41876 0.66 0.620228
Target:  5'- -gAGCGggCACGGCCUGcagccGUAUUGGgaGa -3'
miRNA:   3'- gaUCGCa-GUGCCGGAC-----UAUGACCggC- -5'
12815 5' -56.3 NC_003387.1 + 35634 0.66 0.620228
Target:  5'- --cGcCGagGCGGCCgggcgGGcACUGGCCGa -3'
miRNA:   3'- gauC-GCagUGCCGGa----CUaUGACCGGC- -5'
12815 5' -56.3 NC_003387.1 + 826 0.67 0.598297
Target:  5'- --cGCGaCgACGGCCUG-UACgcGGCCGa -3'
miRNA:   3'- gauCGCaG-UGCCGGACuAUGa-CCGGC- -5'
12815 5' -56.3 NC_003387.1 + 36608 0.67 0.58737
Target:  5'- -cGGCGuucgacUCGCGGCU----GCUGGCCGc -3'
miRNA:   3'- gaUCGC------AGUGCCGGacuaUGACCGGC- -5'
12815 5' -56.3 NC_003387.1 + 22560 0.67 0.58737
Target:  5'- -aGGCGaUCGCgcgGGCCUGGUcgagGgUGGCCu -3'
miRNA:   3'- gaUCGC-AGUG---CCGGACUA----UgACCGGc -5'
12815 5' -56.3 NC_003387.1 + 4210 0.67 0.58737
Target:  5'- --cGCGUguCGGCCcaggACUGGUCGa -3'
miRNA:   3'- gauCGCAguGCCGGacuaUGACCGGC- -5'
12815 5' -56.3 NC_003387.1 + 34421 0.67 0.565636
Target:  5'- -gGGCGccaccgcCGCGGCCgGGUcggcGCUGGUCGa -3'
miRNA:   3'- gaUCGCa------GUGCCGGaCUA----UGACCGGC- -5'
12815 5' -56.3 NC_003387.1 + 14405 0.67 0.565636
Target:  5'- gUGGuCGUCGUGGUCUGAgACUGuGCCc -3'
miRNA:   3'- gAUC-GCAGUGCCGGACUaUGAC-CGGc -5'
12815 5' -56.3 NC_003387.1 + 41106 0.67 0.554846
Target:  5'- -cGGCgGUCGCGGCCuucgUGAUGCccgaccacacGGCCa -3'
miRNA:   3'- gaUCG-CAGUGCCGG----ACUAUGa---------CCGGc -5'
12815 5' -56.3 NC_003387.1 + 40921 0.67 0.554846
Target:  5'- -gGGCGg--UGGCCUGAUggacggcgaGCUGGUCGc -3'
miRNA:   3'- gaUCGCaguGCCGGACUA---------UGACCGGC- -5'
12815 5' -56.3 NC_003387.1 + 51228 0.68 0.527096
Target:  5'- -cGGC--CGCGGCCUGGUGCucgacgucgacgcccUGGCCc -3'
miRNA:   3'- gaUCGcaGUGCCGGACUAUG---------------ACCGGc -5'
12815 5' -56.3 NC_003387.1 + 10807 0.68 0.522871
Target:  5'- -cGGCGgcaCACGGCacga-GCUGGCCGu -3'
miRNA:   3'- gaUCGCa--GUGCCGgacuaUGACCGGC- -5'
12815 5' -56.3 NC_003387.1 + 12374 0.68 0.522871
Target:  5'- --cGCGaUCACGGCCUGcUGCacGGCUu -3'
miRNA:   3'- gauCGC-AGUGCCGGACuAUGa-CCGGc -5'
12815 5' -56.3 NC_003387.1 + 1941 0.68 0.522871
Target:  5'- -cAGCGcaugaUC-CGGCCgcgGGU-CUGGCCGg -3'
miRNA:   3'- gaUCGC-----AGuGCCGGa--CUAuGACCGGC- -5'
12815 5' -56.3 NC_003387.1 + 19405 0.69 0.461282
Target:  5'- -cAGCGUCguGCgGGCCuUGAUGCcaagGGCCu -3'
miRNA:   3'- gaUCGCAG--UG-CCGG-ACUAUGa---CCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.