miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12815 5' -56.3 NC_003387.1 + 48853 0.69 0.451386
Target:  5'- -cGGCGUgCACGcCCUGGUGCgcaGCCGg -3'
miRNA:   3'- gaUCGCA-GUGCcGGACUAUGac-CGGC- -5'
12815 5' -56.3 NC_003387.1 + 14096 0.69 0.441608
Target:  5'- -cAGCGccagCGCGGCCUGcg---GGCCGa -3'
miRNA:   3'- gaUCGCa---GUGCCGGACuaugaCCGGC- -5'
12815 5' -56.3 NC_003387.1 + 50729 0.7 0.422418
Target:  5'- -cAGCGUCACGGCCacuaauggaUGGauUACgcaGGUCGg -3'
miRNA:   3'- gaUCGCAGUGCCGG---------ACU--AUGa--CCGGC- -5'
12815 5' -56.3 NC_003387.1 + 1589 0.7 0.408359
Target:  5'- cCUGGCGgucgacaugucgCACGGCCUGGcgaUuucggucggcgcguGCUGGCUGa -3'
miRNA:   3'- -GAUCGCa-----------GUGCCGGACU---A--------------UGACCGGC- -5'
12815 5' -56.3 NC_003387.1 + 36759 0.7 0.403738
Target:  5'- -gGGCGUCAccgucagcgacCGGCaCUcGGcGCUGGCCGa -3'
miRNA:   3'- gaUCGCAGU-----------GCCG-GA-CUaUGACCGGC- -5'
12815 5' -56.3 NC_003387.1 + 19331 0.7 0.394596
Target:  5'- -cAGCGacgagCGCGGCgaGAacCUGGCCGg -3'
miRNA:   3'- gaUCGCa----GUGCCGgaCUauGACCGGC- -5'
12815 5' -56.3 NC_003387.1 + 12458 0.7 0.385589
Target:  5'- gCUGGCG--GCGGCCUGGccGCgGGCCu -3'
miRNA:   3'- -GAUCGCagUGCCGGACUa-UGaCCGGc -5'
12815 5' -56.3 NC_003387.1 + 6173 0.7 0.385589
Target:  5'- -cAGCGUCAcgacguCGGCCU--UACUGGUCa -3'
miRNA:   3'- gaUCGCAGU------GCCGGAcuAUGACCGGc -5'
12815 5' -56.3 NC_003387.1 + 41008 0.71 0.376719
Target:  5'- -cGGCGUCgACGGCCgGGUcgACUGcGUCGa -3'
miRNA:   3'- gaUCGCAG-UGCCGGaCUA--UGAC-CGGC- -5'
12815 5' -56.3 NC_003387.1 + 12277 0.71 0.367987
Target:  5'- cCUGGCGaCcgGCGGCCgGAUcaGCgGGCCGg -3'
miRNA:   3'- -GAUCGCaG--UGCCGGaCUA--UGaCCGGC- -5'
12815 5' -56.3 NC_003387.1 + 41720 0.71 0.350945
Target:  5'- -aGGCGgccggggCACGGCCgagGAcgucacccgGCUGGCCGc -3'
miRNA:   3'- gaUCGCa------GUGCCGGa--CUa--------UGACCGGC- -5'
12815 5' -56.3 NC_003387.1 + 7201 0.72 0.310836
Target:  5'- gUGGCGUCAauggUGGCCgcGGUGCUgacccGGCCGa -3'
miRNA:   3'- gAUCGCAGU----GCCGGa-CUAUGA-----CCGGC- -5'
12815 5' -56.3 NC_003387.1 + 44631 0.73 0.288492
Target:  5'- -gAGCGUguggcccuggcCGCGGCCUcggcGAUcCUGGCCGa -3'
miRNA:   3'- gaUCGCA-----------GUGCCGGA----CUAuGACCGGC- -5'
12815 5' -56.3 NC_003387.1 + 17497 0.73 0.27431
Target:  5'- -gGGCGcCGCGGCCguaGUGCUcGGCCa -3'
miRNA:   3'- gaUCGCaGUGCCGGac-UAUGA-CCGGc -5'
12815 5' -56.3 NC_003387.1 + 31189 0.74 0.241303
Target:  5'- -gGGCGUCGcCGGUgCUGAUACUcagcgcagcGGCCGg -3'
miRNA:   3'- gaUCGCAGU-GCCG-GACUAUGA---------CCGGC- -5'
12815 5' -56.3 NC_003387.1 + 47756 0.75 0.206137
Target:  5'- gCUGcGCGagCACGGCCUGAccgGCUGGUCu -3'
miRNA:   3'- -GAU-CGCa-GUGCCGGACUa--UGACCGGc -5'
12815 5' -56.3 NC_003387.1 + 7759 0.75 0.195439
Target:  5'- -cGGCGaUCGCGGCCUGAgccGC-GGCCu -3'
miRNA:   3'- gaUCGC-AGUGCCGGACUa--UGaCCGGc -5'
12815 5' -56.3 NC_003387.1 + 30718 1.09 0.000703
Target:  5'- uCUAGCGUCACGGCCUGAUACUGGCCGg -3'
miRNA:   3'- -GAUCGCAGUGCCGGACUAUGACCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.