miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12817 3' -57.4 NC_003387.1 + 52177 0.67 0.429283
Target:  5'- -cGUCAGGGCagccagaucGCGGGCAgGUGuCUCg -3'
miRNA:   3'- aaUAGUCCCGgu-------CGCUCGUaCGC-GAG- -5'
12817 3' -57.4 NC_003387.1 + 12220 0.67 0.419595
Target:  5'- ---cCGGGccaccggcggucGCCAGCGcAGCG-GCGCUCg -3'
miRNA:   3'- aauaGUCC------------CGGUCGC-UCGUaCGCGAG- -5'
12817 3' -57.4 NC_003387.1 + 18719 0.68 0.404373
Target:  5'- ---cCAGGGCgcggcacucgucgagCAGCGGGCAgcgcaugcacaUGCGCUUu -3'
miRNA:   3'- aauaGUCCCG---------------GUCGCUCGU-----------ACGCGAG- -5'
12817 3' -57.4 NC_003387.1 + 7960 0.68 0.390423
Target:  5'- -gGUC-GGGCCgcuucacGGCGGGCGggugcUGCGCUUc -3'
miRNA:   3'- aaUAGuCCCGG-------UCGCUCGU-----ACGCGAG- -5'
12817 3' -57.4 NC_003387.1 + 45514 0.68 0.382205
Target:  5'- ----aAGGGCCgcAGCGAGCugacgGUGUGCUg -3'
miRNA:   3'- aauagUCCCGG--UCGCUCG-----UACGCGAg -5'
12817 3' -57.4 NC_003387.1 + 41163 0.68 0.382205
Target:  5'- gUGUCAGGGCgAGUGcGGCcgGuCGCa- -3'
miRNA:   3'- aAUAGUCCCGgUCGC-UCGuaC-GCGag -5'
12817 3' -57.4 NC_003387.1 + 1144 0.68 0.373211
Target:  5'- --cUCGGcGCCuGCGuGCAUGCGCg- -3'
miRNA:   3'- aauAGUCcCGGuCGCuCGUACGCGag -5'
12817 3' -57.4 NC_003387.1 + 629 0.68 0.364361
Target:  5'- ----aGGGGCCAGUgGGGCAgGCGgUCg -3'
miRNA:   3'- aauagUCCCGGUCG-CUCGUaCGCgAG- -5'
12817 3' -57.4 NC_003387.1 + 16379 0.69 0.322325
Target:  5'- cUAUCAGGGCCAGgcCGAcgacacGCugaugGCGUUCa -3'
miRNA:   3'- aAUAGUCCCGGUC--GCU------CGua---CGCGAG- -5'
12817 3' -57.4 NC_003387.1 + 7286 0.71 0.262812
Target:  5'- ---gCAGGcCCGGCGAGCuUGCGCa- -3'
miRNA:   3'- aauaGUCCcGGUCGCUCGuACGCGag -5'
12817 3' -57.4 NC_003387.1 + 30995 0.71 0.262127
Target:  5'- -aGUUGGGGCCgaggucaggaucgGGcCGAGCGUGCGC-Cg -3'
miRNA:   3'- aaUAGUCCCGG-------------UC-GCUCGUACGCGaG- -5'
12817 3' -57.4 NC_003387.1 + 13767 0.73 0.192749
Target:  5'- --uUCGGGGCCGGUcGGUAuggacccggucgcgcUGCGCUCg -3'
miRNA:   3'- aauAGUCCCGGUCGcUCGU---------------ACGCGAG- -5'
12817 3' -57.4 NC_003387.1 + 19005 0.74 0.166093
Target:  5'- ---aCGGGGCCAGCGAGCuaagccacUGCGUc- -3'
miRNA:   3'- aauaGUCCCGGUCGCUCGu-------ACGCGag -5'
12817 3' -57.4 NC_003387.1 + 25031 0.74 0.161534
Target:  5'- cUGUCGGGGUCGGCGcAGCAcucGCGC-Ca -3'
miRNA:   3'- aAUAGUCCCGGUCGC-UCGUa--CGCGaG- -5'
12817 3' -57.4 NC_003387.1 + 30066 1.08 0.000492
Target:  5'- gUUAUCAGGGCCAGCGAGCAUGCGCUCa -3'
miRNA:   3'- -AAUAGUCCCGGUCGCUCGUACGCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.