miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12817 5' -63.6 NC_003387.1 + 44400 0.66 0.273736
Target:  5'- uCGaGGuCGGCC-GGGCCGU--AGUGAUg -3'
miRNA:   3'- cGC-CC-GCCGGuCCCGGCGguUCACUG- -5'
12817 5' -63.6 NC_003387.1 + 29836 0.66 0.273736
Target:  5'- cGCGucGGUcuuGCCGGGGUCaGCCGAGUG-Ca -3'
miRNA:   3'- -CGC--CCGc--CGGUCCCGG-CGGUUCACuG- -5'
12817 5' -63.6 NC_003387.1 + 35636 0.67 0.269777
Target:  5'- cCGaGGCGGCCGggcGGGCacugGCCGaccucgaccgcgggcGGUGGCu -3'
miRNA:   3'- cGC-CCGCCGGU---CCCGg---CGGU---------------UCACUG- -5'
12817 5' -63.6 NC_003387.1 + 33460 0.67 0.267164
Target:  5'- cGCGcaaGGCGGCCGaaGUCGCCGAGgcggucGGCg -3'
miRNA:   3'- -CGC---CCGCCGGUccCGGCGGUUCa-----CUG- -5'
12817 5' -63.6 NC_003387.1 + 2969 0.67 0.260719
Target:  5'- aGCGGGUGGaCCGGcaGCaagGCCGAGUG-Cu -3'
miRNA:   3'- -CGCCCGCC-GGUCc-CGg--CGGUUCACuG- -5'
12817 5' -63.6 NC_003387.1 + 25178 0.67 0.260719
Target:  5'- gGCGcGGUGGCCccGGcGCCGCCGccgcGGCa -3'
miRNA:   3'- -CGC-CCGCCGGu-CC-CGGCGGUuca-CUG- -5'
12817 5' -63.6 NC_003387.1 + 13710 0.67 0.260719
Target:  5'- cGCGgcccaGGCGGCgCAGGGCgaucagccUGCgCAGGuUGACa -3'
miRNA:   3'- -CGC-----CCGCCG-GUCCCG--------GCG-GUUC-ACUG- -5'
12817 5' -63.6 NC_003387.1 + 30249 0.67 0.260719
Target:  5'- cCGGGUcGUCGGGGUcggCGCCGGGgucgGGCa -3'
miRNA:   3'- cGCCCGcCGGUCCCG---GCGGUUCa---CUG- -5'
12817 5' -63.6 NC_003387.1 + 50960 0.67 0.260719
Target:  5'- uCGGGC-GCCAGcGCCGCCGccgGGCu -3'
miRNA:   3'- cGCCCGcCGGUCcCGGCGGUucaCUG- -5'
12817 5' -63.6 NC_003387.1 + 52463 0.67 0.256913
Target:  5'- cGCGGcGCaGCCAGGGCacugcacgcugagcaUGUCGGG-GGCg -3'
miRNA:   3'- -CGCC-CGcCGGUCCCG---------------GCGGUUCaCUG- -5'
12817 5' -63.6 NC_003387.1 + 40486 0.67 0.256913
Target:  5'- uCGGGUGcacgcucucgccacGCCGGGGCaCGCCGggaaugucgggaacGGUGAa -3'
miRNA:   3'- cGCCCGC--------------CGGUCCCG-GCGGU--------------UCACUg -5'
12817 5' -63.6 NC_003387.1 + 47229 0.67 0.254401
Target:  5'- gGUGGGCcucGGCCAGG--UGCCGGGcGACu -3'
miRNA:   3'- -CGCCCG---CCGGUCCcgGCGGUUCaCUG- -5'
12817 5' -63.6 NC_003387.1 + 6324 0.67 0.254401
Target:  5'- aGCuGGGCGGCCAGGcGaUCGgCAAGaaGCu -3'
miRNA:   3'- -CG-CCCGCCGGUCC-C-GGCgGUUCacUG- -5'
12817 5' -63.6 NC_003387.1 + 2393 0.67 0.254401
Target:  5'- cGCGGGCGGCCugaaugaagucGGGG-CGCaucgcguUGACg -3'
miRNA:   3'- -CGCCCGCCGG-----------UCCCgGCGguuc---ACUG- -5'
12817 5' -63.6 NC_003387.1 + 22626 0.67 0.242144
Target:  5'- --uGGCGGCCcuGGCCGCCcgccGACg -3'
miRNA:   3'- cgcCCGCCGGucCCGGCGGuucaCUG- -5'
12817 5' -63.6 NC_003387.1 + 45177 0.67 0.242144
Target:  5'- cGCGauCGGCCAGGGCgGCagcAGUGcCg -3'
miRNA:   3'- -CGCccGCCGGUCCCGgCGgu-UCACuG- -5'
12817 5' -63.6 NC_003387.1 + 34979 0.67 0.242144
Target:  5'- aGCGGuGUGGCCccuGGcGGCCcgGCCGGGccggGGCg -3'
miRNA:   3'- -CGCC-CGCCGG---UC-CCGG--CGGUUCa---CUG- -5'
12817 5' -63.6 NC_003387.1 + 6126 0.67 0.242144
Target:  5'- cGCGGcaGCGGCUugAGGG-CGCCAcuGUGAg -3'
miRNA:   3'- -CGCC--CGCCGG--UCCCgGCGGUu-CACUg -5'
12817 5' -63.6 NC_003387.1 + 8091 0.67 0.236202
Target:  5'- -aGGccGCGGCCAGGGCCacacgcucgcGCCAcGgcccGACg -3'
miRNA:   3'- cgCC--CGCCGGUCCCGG----------CGGUuCa---CUG- -5'
12817 5' -63.6 NC_003387.1 + 6421 0.67 0.236202
Target:  5'- cGCGGugacuGCgGGCCA-GGCCGUCGAGgucgugGGCg -3'
miRNA:   3'- -CGCC-----CG-CCGGUcCCGGCGGUUCa-----CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.