miRNA display CGI


Results 1 - 20 of 201 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12818 3' -57.5 NC_003387.1 + 26842 0.66 0.626321
Target:  5'- aCGCCGGGgagcACCagGCCGCUCGGcaacuGCaGGCc -3'
miRNA:   3'- cGUGGUCU----UGG--CGGCGAGCU-----UG-CCGc -5'
12818 3' -57.5 NC_003387.1 + 34447 0.66 0.626321
Target:  5'- cGCAgCCGGGcCUGCCGaaguggaucgUCGAcaugGCGGCGg -3'
miRNA:   3'- -CGU-GGUCUuGGCGGCg---------AGCU----UGCCGC- -5'
12818 3' -57.5 NC_003387.1 + 14161 0.66 0.626321
Target:  5'- gGCACCucgccGGGCCggGCCGCgggCGuGAgGGCGu -3'
miRNA:   3'- -CGUGGu----CUUGG--CGGCGa--GC-UUgCCGC- -5'
12818 3' -57.5 NC_003387.1 + 43232 0.66 0.626321
Target:  5'- cGCACCAcguGuuGCCGUUCcuguuCGGCGc -3'
miRNA:   3'- -CGUGGUcu-UggCGGCGAGcuu--GCCGC- -5'
12818 3' -57.5 NC_003387.1 + 24530 0.66 0.626321
Target:  5'- aGCugCAGGucGCCGCC-CUgaaagaCGAaccaauACGGCGa -3'
miRNA:   3'- -CGugGUCU--UGGCGGcGA------GCU------UGCCGC- -5'
12818 3' -57.5 NC_003387.1 + 39596 0.66 0.619849
Target:  5'- cGCACCAGcgaggccgacgagugGAUCGCCGagguGGCGGCa -3'
miRNA:   3'- -CGUGGUC---------------UUGGCGGCgagcUUGCCGc -5'
12818 3' -57.5 NC_003387.1 + 41744 0.66 0.615537
Target:  5'- uUugCGGcGCCGCCGauauucuuCUCGAucaccCGGCGg -3'
miRNA:   3'- cGugGUCuUGGCGGC--------GAGCUu----GCCGC- -5'
12818 3' -57.5 NC_003387.1 + 41204 0.66 0.615537
Target:  5'- uGCACU---ACCGCUGCcCGAauaagcACGGCa -3'
miRNA:   3'- -CGUGGucuUGGCGGCGaGCU------UGCCGc -5'
12818 3' -57.5 NC_003387.1 + 22064 0.66 0.615537
Target:  5'- uCACCGGcACCGuuGg-CGA-CGGCGg -3'
miRNA:   3'- cGUGGUCuUGGCggCgaGCUuGCCGC- -5'
12818 3' -57.5 NC_003387.1 + 8075 0.66 0.615537
Target:  5'- cGCGCUAac-CCGCUGC-CGGuCGGCGc -3'
miRNA:   3'- -CGUGGUcuuGGCGGCGaGCUuGCCGC- -5'
12818 3' -57.5 NC_003387.1 + 48344 0.66 0.615537
Target:  5'- aGUAUCAGGagcACCugGCCGC-CGAGCGcGCc -3'
miRNA:   3'- -CGUGGUCU---UGG--CGGCGaGCUUGC-CGc -5'
12818 3' -57.5 NC_003387.1 + 37785 0.66 0.615537
Target:  5'- cCACCggGGAugCGCCGCUgCGc-CGGUa -3'
miRNA:   3'- cGUGG--UCUugGCGGCGA-GCuuGCCGc -5'
12818 3' -57.5 NC_003387.1 + 50350 0.66 0.615537
Target:  5'- cGCGgCAacguGACCGCguacguggCGCUCGAcgccgACGGCGg -3'
miRNA:   3'- -CGUgGUc---UUGGCG--------GCGAGCU-----UGCCGC- -5'
12818 3' -57.5 NC_003387.1 + 46494 0.66 0.615537
Target:  5'- uGCGaguUCAGGuguuCCGCaGCUCGcuCGGCGa -3'
miRNA:   3'- -CGU---GGUCUu---GGCGgCGAGCuuGCCGC- -5'
12818 3' -57.5 NC_003387.1 + 1966 0.66 0.615537
Target:  5'- -gGCCGGGcAgCGCCaGCUUGAccugaaacgcACGGCGu -3'
miRNA:   3'- cgUGGUCU-UgGCGG-CGAGCU----------UGCCGC- -5'
12818 3' -57.5 NC_003387.1 + 13623 0.66 0.614459
Target:  5'- gGCACCGGGugaguucaacccgGCCaCCG-UCGG-CGGCGg -3'
miRNA:   3'- -CGUGGUCU-------------UGGcGGCgAGCUuGCCGC- -5'
12818 3' -57.5 NC_003387.1 + 3313 0.66 0.612304
Target:  5'- gGCGCCgAGGugcuguggcgugacACCGaggcCCGCUCGuuUGGCGc -3'
miRNA:   3'- -CGUGG-UCU--------------UGGC----GGCGAGCuuGCCGC- -5'
12818 3' -57.5 NC_003387.1 + 34234 0.66 0.604767
Target:  5'- uGCugCAGGcCCucggGgCGCUCGAcCGGCu -3'
miRNA:   3'- -CGugGUCUuGG----CgGCGAGCUuGCCGc -5'
12818 3' -57.5 NC_003387.1 + 37356 0.66 0.604767
Target:  5'- uGCGCUAu--CUGCgGCaccugUCGGGCGGCGg -3'
miRNA:   3'- -CGUGGUcuuGGCGgCG-----AGCUUGCCGC- -5'
12818 3' -57.5 NC_003387.1 + 2944 0.66 0.604767
Target:  5'- uGCGCCAGcAGCCaCCGCagGuAACGcGCa -3'
miRNA:   3'- -CGUGGUC-UUGGcGGCGagC-UUGC-CGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.