miRNA display CGI


Results 21 - 40 of 201 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12818 3' -57.5 NC_003387.1 + 48424 0.66 0.604767
Target:  5'- -uGCCGGgucgcgGugCGCUGCUCGcccGCGGCc -3'
miRNA:   3'- cgUGGUC------UugGCGGCGAGCu--UGCCGc -5'
12818 3' -57.5 NC_003387.1 + 45904 0.66 0.604767
Target:  5'- aGCACUAGGcgaACCGCgC-CUUGAGCcgcagGGCGa -3'
miRNA:   3'- -CGUGGUCU---UGGCG-GcGAGCUUG-----CCGC- -5'
12818 3' -57.5 NC_003387.1 + 2944 0.66 0.604767
Target:  5'- uGCGCCAGcAGCCaCCGCagGuAACGcGCa -3'
miRNA:   3'- -CGUGGUC-UUGGcGGCGagC-UUGC-CGc -5'
12818 3' -57.5 NC_003387.1 + 52079 0.66 0.604767
Target:  5'- uCAUCGGGcgucGCUGCCGCg---GCGGCGa -3'
miRNA:   3'- cGUGGUCU----UGGCGGCGagcuUGCCGC- -5'
12818 3' -57.5 NC_003387.1 + 4233 0.66 0.604767
Target:  5'- cCugCAGGcCCGCCGC---GACGGCc -3'
miRNA:   3'- cGugGUCUuGGCGGCGagcUUGCCGc -5'
12818 3' -57.5 NC_003387.1 + 25465 0.66 0.604767
Target:  5'- cGCgACCAGGcauGCCggGCCGcCUCGAcCGcGCGu -3'
miRNA:   3'- -CG-UGGUCU---UGG--CGGC-GAGCUuGC-CGC- -5'
12818 3' -57.5 NC_003387.1 + 24865 0.66 0.600465
Target:  5'- cGCGCCGGugucgaucguggcGCCGCgGCugUCGAACucgaccgacgGGCGg -3'
miRNA:   3'- -CGUGGUCu------------UGGCGgCG--AGCUUG----------CCGC- -5'
12818 3' -57.5 NC_003387.1 + 43708 0.66 0.594019
Target:  5'- gGCGCCc--GCCaGgUGCUCGA-CGGCGg -3'
miRNA:   3'- -CGUGGucuUGG-CgGCGAGCUuGCCGC- -5'
12818 3' -57.5 NC_003387.1 + 4411 0.66 0.594019
Target:  5'- cGCGCCGccucGAuuUCGUCGaggCGGGCGGCGa -3'
miRNA:   3'- -CGUGGU----CUu-GGCGGCga-GCUUGCCGC- -5'
12818 3' -57.5 NC_003387.1 + 14635 0.66 0.594019
Target:  5'- gGUGCCcGucagGCCGCCGCgcacagUGAcGCGGCGc -3'
miRNA:   3'- -CGUGGuCu---UGGCGGCGa-----GCU-UGCCGC- -5'
12818 3' -57.5 NC_003387.1 + 28267 0.66 0.583303
Target:  5'- aGCACCu---CgCGCUGCUCGu-CGGCu -3'
miRNA:   3'- -CGUGGucuuG-GCGGCGAGCuuGCCGc -5'
12818 3' -57.5 NC_003387.1 + 27246 0.66 0.583303
Target:  5'- uCGCCcgacaGGAugCGCCGCaUGAGCcGCGa -3'
miRNA:   3'- cGUGG-----UCUugGCGGCGaGCUUGcCGC- -5'
12818 3' -57.5 NC_003387.1 + 44611 0.66 0.583303
Target:  5'- aCGCCGucGGGCCGUgGCgCGAGCGuGUGg -3'
miRNA:   3'- cGUGGU--CUUGGCGgCGaGCUUGC-CGC- -5'
12818 3' -57.5 NC_003387.1 + 12216 0.66 0.582233
Target:  5'- gGUGCCGGGccACCGgCGgUCGccagcgcAGCGGCGc -3'
miRNA:   3'- -CGUGGUCU--UGGCgGCgAGC-------UUGCCGC- -5'
12818 3' -57.5 NC_003387.1 + 22657 0.66 0.582233
Target:  5'- cGCcCCGGcGGCCGUcagggcgCGCUCGugggcggugucGACGGCGg -3'
miRNA:   3'- -CGuGGUC-UUGGCG-------GCGAGC-----------UUGCCGC- -5'
12818 3' -57.5 NC_003387.1 + 24852 0.66 0.582233
Target:  5'- -gGCCGGGugCGUgGUggcuggcucgaccUCGGGCGGUGg -3'
miRNA:   3'- cgUGGUCUugGCGgCG-------------AGCUUGCCGC- -5'
12818 3' -57.5 NC_003387.1 + 42113 0.66 0.580095
Target:  5'- cGCAaggguGAGCCGgUGCUCGucacgugugaacguGGCGGCGg -3'
miRNA:   3'- -CGUggu--CUUGGCgGCGAGC--------------UUGCCGC- -5'
12818 3' -57.5 NC_003387.1 + 16083 0.66 0.572625
Target:  5'- cCACuCGGGGgCGCCG-UCGGgcaucGCGGCGg -3'
miRNA:   3'- cGUG-GUCUUgGCGGCgAGCU-----UGCCGC- -5'
12818 3' -57.5 NC_003387.1 + 50999 0.66 0.572625
Target:  5'- aGCACCGGGAUgCGCCGCc----CGGCc -3'
miRNA:   3'- -CGUGGUCUUG-GCGGCGagcuuGCCGc -5'
12818 3' -57.5 NC_003387.1 + 26924 0.66 0.572625
Target:  5'- -gGCCGccACCgagGCCGC-CGAGCGGCc -3'
miRNA:   3'- cgUGGUcuUGG---CGGCGaGCUUGCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.