miRNA display CGI


Results 1 - 20 of 201 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12818 3' -57.5 NC_003387.1 + 24910 0.79 0.092474
Target:  5'- gGCACCGGcaagugcguuguGACCGCCGCgacCGA-CGGCGg -3'
miRNA:   3'- -CGUGGUC------------UUGGCGGCGa--GCUuGCCGC- -5'
12818 3' -57.5 NC_003387.1 + 2457 0.71 0.335258
Target:  5'- cGCGCCAGGccgaggugcACCGCCcggcGCUgaCGuACGGCGc -3'
miRNA:   3'- -CGUGGUCU---------UGGCGG----CGA--GCuUGCCGC- -5'
12818 3' -57.5 NC_003387.1 + 50531 0.71 0.343288
Target:  5'- gGCACCccuGAGCCcgcgGUgGCUCGGGgGGCGc -3'
miRNA:   3'- -CGUGGu--CUUGG----CGgCGAGCUUgCCGC- -5'
12818 3' -57.5 NC_003387.1 + 43232 0.66 0.626321
Target:  5'- cGCACCAcguGuuGCCGUUCcuguuCGGCGc -3'
miRNA:   3'- -CGUGGUcu-UggCGGCGAGcuu--GCCGC- -5'
12818 3' -57.5 NC_003387.1 + 27926 0.77 0.143702
Target:  5'- uGCGCCAGGuCgGCCGCgaccCGAGCGGUu -3'
miRNA:   3'- -CGUGGUCUuGgCGGCGa---GCUUGCCGc -5'
12818 3' -57.5 NC_003387.1 + 17164 0.75 0.182904
Target:  5'- cGCGCUgagcuGGugCGCCGCcUGGGCGGCGa -3'
miRNA:   3'- -CGUGGu----CUugGCGGCGaGCUUGCCGC- -5'
12818 3' -57.5 NC_003387.1 + 3522 0.73 0.249643
Target:  5'- gGCGCCAGugcccccGCCGCCGCccCaGGCGGCu -3'
miRNA:   3'- -CGUGGUCu------UGGCGGCGa-GcUUGCCGc -5'
12818 3' -57.5 NC_003387.1 + 39242 0.73 0.249643
Target:  5'- gGCGCCGGGcgagGCCGUCGaguUCGAccuCGGCGa -3'
miRNA:   3'- -CGUGGUCU----UGGCGGCg--AGCUu--GCCGC- -5'
12818 3' -57.5 NC_003387.1 + 30544 0.72 0.275994
Target:  5'- gGCGCCccgacauGGACCGCCGCcgCGGcCGGUa -3'
miRNA:   3'- -CGUGGu------CUUGGCGGCGa-GCUuGCCGc -5'
12818 3' -57.5 NC_003387.1 + 52244 0.71 0.319612
Target:  5'- aGCACCAGucgagacugacGGCaaCGCCGCgccCGAGCGcGCGg -3'
miRNA:   3'- -CGUGGUC-----------UUG--GCGGCGa--GCUUGC-CGC- -5'
12818 3' -57.5 NC_003387.1 + 24268 0.72 0.289982
Target:  5'- uGCGCCGcGAucuGCCGCCGCcUCG-GCGuGCGc -3'
miRNA:   3'- -CGUGGU-CU---UGGCGGCG-AGCuUGC-CGC- -5'
12818 3' -57.5 NC_003387.1 + 50141 0.72 0.275994
Target:  5'- uUACgCAGAACUGCCGUgUGAcCGGCGa -3'
miRNA:   3'- cGUG-GUCUUGGCGGCGaGCUuGCCGC- -5'
12818 3' -57.5 NC_003387.1 + 26120 0.78 0.121996
Target:  5'- uGCGCCAGGucggcgcguccGUCGCCGCUCGcGCGGCc -3'
miRNA:   3'- -CGUGGUCU-----------UGGCGGCGAGCuUGCCGc -5'
12818 3' -57.5 NC_003387.1 + 42039 0.72 0.289982
Target:  5'- aGCGCCAGGG-CGCCaagaUCGAccGCGGCGu -3'
miRNA:   3'- -CGUGGUCUUgGCGGcg--AGCU--UGCCGC- -5'
12818 3' -57.5 NC_003387.1 + 23472 0.77 0.12887
Target:  5'- aGgACaacGAcCCGCCGUUCGAGCGGCGg -3'
miRNA:   3'- -CgUGgu-CUuGGCGGCGAGCUUGCCGC- -5'
12818 3' -57.5 NC_003387.1 + 23842 0.73 0.26255
Target:  5'- cGCGCCuaAGCCGCCGCagUCGGGgccguggacCGGCGa -3'
miRNA:   3'- -CGUGGucUUGGCGGCG--AGCUU---------GCCGC- -5'
12818 3' -57.5 NC_003387.1 + 41979 0.72 0.297183
Target:  5'- uGCGCgCGGAgGCCGCCGCggugcUCaAGCGGUGg -3'
miRNA:   3'- -CGUG-GUCU-UGGCGGCG-----AGcUUGCCGC- -5'
12818 3' -57.5 NC_003387.1 + 45869 0.71 0.335258
Target:  5'- uGCugCGGcuGCgCGCCGCggcCGAGCgGGCGa -3'
miRNA:   3'- -CGugGUCu-UG-GCGGCGa--GCUUG-CCGC- -5'
12818 3' -57.5 NC_003387.1 + 17594 0.77 0.12887
Target:  5'- cCugCAGuGGCCGCCGCUUGAGCaGGCc -3'
miRNA:   3'- cGugGUC-UUGGCGGCGAGCUUG-CCGc -5'
12818 3' -57.5 NC_003387.1 + 29323 0.74 0.214051
Target:  5'- aGCGCCAGGccgcgcugaaaGCCGCCGCgCGcuucauccuCGGCGa -3'
miRNA:   3'- -CGUGGUCU-----------UGGCGGCGaGCuu-------GCCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.