miRNA display CGI


Results 1 - 20 of 29 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12818 5' -51.9 NC_003387.1 + 16053 0.66 0.875054
Target:  5'- gGCGaCGACaugaUCc-GCGAGGUCGUCGg -3'
miRNA:   3'- aUGCgGCUGg---AGaaCGCUUUAGCAGU- -5'
12818 5' -51.9 NC_003387.1 + 6882 0.66 0.866892
Target:  5'- cGCGCagGAUCUCc-GCGgcGUCGUCGc -3'
miRNA:   3'- aUGCGg-CUGGAGaaCGCuuUAGCAGU- -5'
12818 5' -51.9 NC_003387.1 + 49428 0.66 0.866892
Target:  5'- gGCGCCcgagucggcGGCCg--UGuCGggGUCGUCGu -3'
miRNA:   3'- aUGCGG---------CUGGagaAC-GCuuUAGCAGU- -5'
12818 5' -51.9 NC_003387.1 + 43400 0.66 0.866892
Target:  5'- gACGUCGACCUCggggGCcguGUCaGUCGc -3'
miRNA:   3'- aUGCGGCUGGAGaa--CGcuuUAG-CAGU- -5'
12818 5' -51.9 NC_003387.1 + 13107 0.66 0.866892
Target:  5'- cAUGCCGccACCUCg-GCGAuccacUCGUCGg -3'
miRNA:   3'- aUGCGGC--UGGAGaaCGCUuu---AGCAGU- -5'
12818 5' -51.9 NC_003387.1 + 37285 0.66 0.85847
Target:  5'- gGCGCCuGGCgcgCUCgucgGCGcgGUCGUCGa -3'
miRNA:   3'- aUGCGG-CUG---GAGaa--CGCuuUAGCAGU- -5'
12818 5' -51.9 NC_003387.1 + 32357 0.67 0.822349
Target:  5'- cACGCCcGCCUUcaagGCGAGGUUGUa- -3'
miRNA:   3'- aUGCGGcUGGAGaa--CGCUUUAGCAgu -5'
12818 5' -51.9 NC_003387.1 + 20529 0.67 0.822349
Target:  5'- aUGCGCCuGCC-CcUGCGGuguUCGUCGg -3'
miRNA:   3'- -AUGCGGcUGGaGaACGCUuu-AGCAGU- -5'
12818 5' -51.9 NC_003387.1 + 35438 0.67 0.81276
Target:  5'- -uCGCCGGCUguuagCUguCGggGUCGUCGu -3'
miRNA:   3'- auGCGGCUGGa----GAacGCuuUAGCAGU- -5'
12818 5' -51.9 NC_003387.1 + 32774 0.67 0.81276
Target:  5'- gACGCgGuACCUCUUGCccGA-CGUCGa -3'
miRNA:   3'- aUGCGgC-UGGAGAACGcuUUaGCAGU- -5'
12818 5' -51.9 NC_003387.1 + 24498 0.67 0.802968
Target:  5'- --gGCCGACCg---GCGGu-UCGUCAg -3'
miRNA:   3'- augCGGCUGGagaaCGCUuuAGCAGU- -5'
12818 5' -51.9 NC_003387.1 + 30578 0.67 0.802968
Target:  5'- cGCGCCGugCcgCgagUGCGGGuaCGUCGg -3'
miRNA:   3'- aUGCGGCugGa-Ga--ACGCUUuaGCAGU- -5'
12818 5' -51.9 NC_003387.1 + 52043 0.67 0.802968
Target:  5'- gGCGCgCGACCUCgcuaaGCGucgcCGUCGa -3'
miRNA:   3'- aUGCG-GCUGGAGaa---CGCuuuaGCAGU- -5'
12818 5' -51.9 NC_003387.1 + 17181 0.67 0.802968
Target:  5'- gGCGUCGugCUCcugGCGGgccaGGUUGUCGc -3'
miRNA:   3'- aUGCGGCugGAGaa-CGCU----UUAGCAGU- -5'
12818 5' -51.9 NC_003387.1 + 19249 0.68 0.782825
Target:  5'- gGCGCCGACCgccucgGCGAcuUCGg-- -3'
miRNA:   3'- aUGCGGCUGGagaa--CGCUuuAGCagu -5'
12818 5' -51.9 NC_003387.1 + 32669 0.68 0.762014
Target:  5'- cACGCCGAgcugaaCCUCgccGCGcacGUCGUCGa -3'
miRNA:   3'- aUGCGGCU------GGAGaa-CGCuu-UAGCAGU- -5'
12818 5' -51.9 NC_003387.1 + 1456 0.68 0.762014
Target:  5'- -uCGUCGuCCUCgu-CGAGGUCGUCGa -3'
miRNA:   3'- auGCGGCuGGAGaacGCUUUAGCAGU- -5'
12818 5' -51.9 NC_003387.1 + 43000 0.68 0.762014
Target:  5'- gACGCCGACCcguacgcgCUgaacaccccgaGCGguGUCGUCAa -3'
miRNA:   3'- aUGCGGCUGGa-------GAa----------CGCuuUAGCAGU- -5'
12818 5' -51.9 NC_003387.1 + 18690 0.68 0.75139
Target:  5'- cACGCCGACCaggUGCG-GGUCGcgCAg -3'
miRNA:   3'- aUGCGGCUGGagaACGCuUUAGCa-GU- -5'
12818 5' -51.9 NC_003387.1 + 26610 0.68 0.740636
Target:  5'- cGCGCCGACCUg--GCGcAGGUaGUCGa -3'
miRNA:   3'- aUGCGGCUGGAgaaCGC-UUUAgCAGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.