Results 21 - 29 of 29 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 12818 | 5' | -51.9 | NC_003387.1 | + | 35438 | 0.67 | 0.81276 |
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Target: 5'- -uCGCCGGCUguuagCUguCGggGUCGUCGu -3' miRNA: 3'- auGCGGCUGGa----GAacGCuuUAGCAGU- -5' |
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| 12818 | 5' | -51.9 | NC_003387.1 | + | 35897 | 0.71 | 0.572156 |
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Target: 5'- cACGUCGACCUgcUGCGGua-CGUCAa -3' miRNA: 3'- aUGCGGCUGGAgaACGCUuuaGCAGU- -5' |
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| 12818 | 5' | -51.9 | NC_003387.1 | + | 37285 | 0.66 | 0.85847 |
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Target: 5'- gGCGCCuGGCgcgCUCgucgGCGcgGUCGUCGa -3' miRNA: 3'- aUGCGG-CUG---GAGaa--CGCuuUAGCAGU- -5' |
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| 12818 | 5' | -51.9 | NC_003387.1 | + | 43000 | 0.68 | 0.762014 |
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Target: 5'- gACGCCGACCcguacgcgCUgaacaccccgaGCGguGUCGUCAa -3' miRNA: 3'- aUGCGGCUGGa-------GAa----------CGCuuUAGCAGU- -5' |
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| 12818 | 5' | -51.9 | NC_003387.1 | + | 43244 | 0.69 | 0.674101 |
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Target: 5'- gACGCCGuaCUCgggGuCGAAAUCGUCGg -3' miRNA: 3'- aUGCGGCugGAGaa-C-GCUUUAGCAGU- -5' |
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| 12818 | 5' | -51.9 | NC_003387.1 | + | 43400 | 0.66 | 0.866892 |
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Target: 5'- gACGUCGACCUCggggGCcguGUCaGUCGc -3' miRNA: 3'- aUGCGGCUGGAGaa--CGcuuUAG-CAGU- -5' |
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| 12818 | 5' | -51.9 | NC_003387.1 | + | 49428 | 0.66 | 0.866892 |
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Target: 5'- gGCGCCcgagucggcGGCCg--UGuCGggGUCGUCGu -3' miRNA: 3'- aUGCGG---------CUGGagaAC-GCuuUAGCAGU- -5' |
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| 12818 | 5' | -51.9 | NC_003387.1 | + | 50465 | 0.74 | 0.404206 |
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Target: 5'- --aGCCGACCcCggcccGCGAGGUCGUCGg -3' miRNA: 3'- augCGGCUGGaGaa---CGCUUUAGCAGU- -5' |
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| 12818 | 5' | -51.9 | NC_003387.1 | + | 52043 | 0.67 | 0.802968 |
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Target: 5'- gGCGCgCGACCUCgcuaaGCGucgcCGUCGa -3' miRNA: 3'- aUGCG-GCUGGAGaa---CGCuuuaGCAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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