Results 1 - 20 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12818 | 5' | -51.9 | NC_003387.1 | + | 52043 | 0.67 | 0.802968 |
Target: 5'- gGCGCgCGACCUCgcuaaGCGucgcCGUCGa -3' miRNA: 3'- aUGCG-GCUGGAGaa---CGCuuuaGCAGU- -5' |
|||||||
12818 | 5' | -51.9 | NC_003387.1 | + | 50465 | 0.74 | 0.404206 |
Target: 5'- --aGCCGACCcCggcccGCGAGGUCGUCGg -3' miRNA: 3'- augCGGCUGGaGaa---CGCUUUAGCAGU- -5' |
|||||||
12818 | 5' | -51.9 | NC_003387.1 | + | 49428 | 0.66 | 0.866892 |
Target: 5'- gGCGCCcgagucggcGGCCg--UGuCGggGUCGUCGu -3' miRNA: 3'- aUGCGG---------CUGGagaAC-GCuuUAGCAGU- -5' |
|||||||
12818 | 5' | -51.9 | NC_003387.1 | + | 43400 | 0.66 | 0.866892 |
Target: 5'- gACGUCGACCUCggggGCcguGUCaGUCGc -3' miRNA: 3'- aUGCGGCUGGAGaa--CGcuuUAG-CAGU- -5' |
|||||||
12818 | 5' | -51.9 | NC_003387.1 | + | 43244 | 0.69 | 0.674101 |
Target: 5'- gACGCCGuaCUCgggGuCGAAAUCGUCGg -3' miRNA: 3'- aUGCGGCugGAGaa-C-GCUUUAGCAGU- -5' |
|||||||
12818 | 5' | -51.9 | NC_003387.1 | + | 43000 | 0.68 | 0.762014 |
Target: 5'- gACGCCGACCcguacgcgCUgaacaccccgaGCGguGUCGUCAa -3' miRNA: 3'- aUGCGGCUGGa-------GAa----------CGCuuUAGCAGU- -5' |
|||||||
12818 | 5' | -51.9 | NC_003387.1 | + | 37285 | 0.66 | 0.85847 |
Target: 5'- gGCGCCuGGCgcgCUCgucgGCGcgGUCGUCGa -3' miRNA: 3'- aUGCGG-CUG---GAGaa--CGCuuUAGCAGU- -5' |
|||||||
12818 | 5' | -51.9 | NC_003387.1 | + | 35897 | 0.71 | 0.572156 |
Target: 5'- cACGUCGACCUgcUGCGGua-CGUCAa -3' miRNA: 3'- aUGCGGCUGGAgaACGCUuuaGCAGU- -5' |
|||||||
12818 | 5' | -51.9 | NC_003387.1 | + | 35438 | 0.67 | 0.81276 |
Target: 5'- -uCGCCGGCUguuagCUguCGggGUCGUCGu -3' miRNA: 3'- auGCGGCUGGa----GAacGCuuUAGCAGU- -5' |
|||||||
12818 | 5' | -51.9 | NC_003387.1 | + | 32774 | 0.67 | 0.81276 |
Target: 5'- gACGCgGuACCUCUUGCccGA-CGUCGa -3' miRNA: 3'- aUGCGgC-UGGAGAACGcuUUaGCAGU- -5' |
|||||||
12818 | 5' | -51.9 | NC_003387.1 | + | 32669 | 0.68 | 0.762014 |
Target: 5'- cACGCCGAgcugaaCCUCgccGCGcacGUCGUCGa -3' miRNA: 3'- aUGCGGCU------GGAGaa-CGCuu-UAGCAGU- -5' |
|||||||
12818 | 5' | -51.9 | NC_003387.1 | + | 32357 | 0.67 | 0.822349 |
Target: 5'- cACGCCcGCCUUcaagGCGAGGUUGUa- -3' miRNA: 3'- aUGCGGcUGGAGaa--CGCUUUAGCAgu -5' |
|||||||
12818 | 5' | -51.9 | NC_003387.1 | + | 30578 | 0.67 | 0.802968 |
Target: 5'- cGCGCCGugCcgCgagUGCGGGuaCGUCGg -3' miRNA: 3'- aUGCGGCugGa-Ga--ACGCUUuaGCAGU- -5' |
|||||||
12818 | 5' | -51.9 | NC_003387.1 | + | 29275 | 1.07 | 0.002625 |
Target: 5'- uUACGCCGACCUCUUGCGAAAUCGUCAu -3' miRNA: 3'- -AUGCGGCUGGAGAACGCUUUAGCAGU- -5' |
|||||||
12818 | 5' | -51.9 | NC_003387.1 | + | 28071 | 0.7 | 0.640096 |
Target: 5'- gGCGCuggCGACCUCgcgcagcaggGCGAGGUgCGUCGg -3' miRNA: 3'- aUGCG---GCUGGAGaa--------CGCUUUA-GCAGU- -5' |
|||||||
12818 | 5' | -51.9 | NC_003387.1 | + | 26610 | 0.68 | 0.740636 |
Target: 5'- cGCGCCGACCUg--GCGcAGGUaGUCGa -3' miRNA: 3'- aUGCGGCUGGAgaaCGC-UUUAgCAGU- -5' |
|||||||
12818 | 5' | -51.9 | NC_003387.1 | + | 24498 | 0.67 | 0.802968 |
Target: 5'- --gGCCGACCg---GCGGu-UCGUCAg -3' miRNA: 3'- augCGGCUGGagaaCGCUuuAGCAGU- -5' |
|||||||
12818 | 5' | -51.9 | NC_003387.1 | + | 21719 | 0.76 | 0.316286 |
Target: 5'- cGCGCCGACCUggucgUG-GAAAUCGUCGc -3' miRNA: 3'- aUGCGGCUGGAga---ACgCUUUAGCAGU- -5' |
|||||||
12818 | 5' | -51.9 | NC_003387.1 | + | 20529 | 0.67 | 0.822349 |
Target: 5'- aUGCGCCuGCC-CcUGCGGuguUCGUCGg -3' miRNA: 3'- -AUGCGGcUGGaGaACGCUuu-AGCAGU- -5' |
|||||||
12818 | 5' | -51.9 | NC_003387.1 | + | 19249 | 0.68 | 0.782825 |
Target: 5'- gGCGCCGACCgccucgGCGAcuUCGg-- -3' miRNA: 3'- aUGCGGCUGGagaa--CGCUuuAGCagu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home