miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12819 5' -61 NC_003387.1 + 12955 0.66 0.414925
Target:  5'- cACGucGGCgucugGCGGCUGuacCGGGCgGCCa -3'
miRNA:   3'- uUGC--CCGa----CGCCGACu--GCUUGgCGGc -5'
12819 5' -61 NC_003387.1 + 22357 0.66 0.405866
Target:  5'- cAGCGaGCUGCaGGCgGuCGAcucgugaaugugGCCGCCGg -3'
miRNA:   3'- -UUGCcCGACG-CCGaCuGCU------------UGGCGGC- -5'
12819 5' -61 NC_003387.1 + 40618 0.66 0.405866
Target:  5'- aGGCGGGCcgGUGGCgUGGuuuugGGACCGUCa -3'
miRNA:   3'- -UUGCCCGa-CGCCG-ACUg----CUUGGCGGc -5'
12819 5' -61 NC_003387.1 + 45293 0.66 0.396932
Target:  5'- gGGCGGGCaucUGUGGCUuuCGGACguuUGCCa -3'
miRNA:   3'- -UUGCCCG---ACGCCGAcuGCUUG---GCGGc -5'
12819 5' -61 NC_003387.1 + 44636 0.66 0.388125
Target:  5'- gGGCGGGUUGgcgccgacCGGCaGcggguuagcGCGGGCCGCCa -3'
miRNA:   3'- -UUGCCCGAC--------GCCGaC---------UGCUUGGCGGc -5'
12819 5' -61 NC_003387.1 + 34851 0.66 0.388125
Target:  5'- cGCGGGCcuUGCGGUga--GAGCaGCCGg -3'
miRNA:   3'- uUGCCCG--ACGCCGacugCUUGgCGGC- -5'
12819 5' -61 NC_003387.1 + 26703 0.66 0.379448
Target:  5'- cGGCGGGUUgGUGGC-GAUGAACCcgacaCCGg -3'
miRNA:   3'- -UUGCCCGA-CGCCGaCUGCUUGGc----GGC- -5'
12819 5' -61 NC_003387.1 + 21494 0.66 0.370901
Target:  5'- -cCGGGCUGguuCGugucGCUGcACGAGCCgGCCGc -3'
miRNA:   3'- uuGCCCGAC---GC----CGAC-UGCUUGG-CGGC- -5'
12819 5' -61 NC_003387.1 + 26580 0.66 0.370901
Target:  5'- -uCGGGgUcaggccgcgcgaGCGGC-GACGGACgCGCCGa -3'
miRNA:   3'- uuGCCCgA------------CGCCGaCUGCUUG-GCGGC- -5'
12819 5' -61 NC_003387.1 + 4552 0.66 0.370901
Target:  5'- uGCGGGcCUGCGcCUGcGCGA-CCGCgCGg -3'
miRNA:   3'- uUGCCC-GACGCcGAC-UGCUuGGCG-GC- -5'
12819 5' -61 NC_003387.1 + 21020 0.67 0.362488
Target:  5'- -cCGGGCUGUcaacauGGCUGACcg-UCGCCa -3'
miRNA:   3'- uuGCCCGACG------CCGACUGcuuGGCGGc -5'
12819 5' -61 NC_003387.1 + 7272 0.67 0.357503
Target:  5'- uGACGGGUU-CGGCgUGACGuucacgcccggcgguAACuCGCCGg -3'
miRNA:   3'- -UUGCCCGAcGCCG-ACUGC---------------UUG-GCGGC- -5'
12819 5' -61 NC_003387.1 + 41148 0.67 0.354207
Target:  5'- cGACGGccGCUGCGaGUgucagGGCGAguGCgGCCGg -3'
miRNA:   3'- -UUGCC--CGACGC-CGa----CUGCU--UGgCGGC- -5'
12819 5' -61 NC_003387.1 + 7329 0.67 0.354207
Target:  5'- cGAUcGGCUcggGCGGCcgGGCGcagcuAACCGCCGg -3'
miRNA:   3'- -UUGcCCGA---CGCCGa-CUGC-----UUGGCGGC- -5'
12819 5' -61 NC_003387.1 + 1946 0.67 0.346061
Target:  5'- cGACGcaggcGGUUGgGGCUG--GGACCGCCGc -3'
miRNA:   3'- -UUGC-----CCGACgCCGACugCUUGGCGGC- -5'
12819 5' -61 NC_003387.1 + 1840 0.67 0.344448
Target:  5'- --aGGGCUGCGGCcuguuugagaacGGCGucaaCGCCGa -3'
miRNA:   3'- uugCCCGACGCCGa-----------CUGCuug-GCGGC- -5'
12819 5' -61 NC_003387.1 + 40919 0.67 0.33805
Target:  5'- -uCGGGCgGUGGcCUGAUGGACgGCg- -3'
miRNA:   3'- uuGCCCGaCGCC-GACUGCUUGgCGgc -5'
12819 5' -61 NC_003387.1 + 27499 0.67 0.337256
Target:  5'- gAGC-GGCUGUGGC--GCGAagauccgGCCGCCGc -3'
miRNA:   3'- -UUGcCCGACGCCGacUGCU-------UGGCGGC- -5'
12819 5' -61 NC_003387.1 + 15990 0.67 0.330175
Target:  5'- -uCGGGCcGCacuGGCUGGucCGGuacgGCCGCCGa -3'
miRNA:   3'- uuGCCCGaCG---CCGACU--GCU----UGGCGGC- -5'
12819 5' -61 NC_003387.1 + 24879 0.67 0.330175
Target:  5'- -uCGuGGCgccGCGGCUGuCGAACuCGaCCGa -3'
miRNA:   3'- uuGC-CCGa--CGCCGACuGCUUG-GC-GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.