Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
12819 | 5' | -61 | NC_003387.1 | + | 7329 | 0.67 | 0.354207 |
Target: 5'- cGAUcGGCUcggGCGGCcgGGCGcagcuAACCGCCGg -3' miRNA: 3'- -UUGcCCGA---CGCCGa-CUGC-----UUGGCGGC- -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 24879 | 0.67 | 0.330175 |
Target: 5'- -uCGuGGCgccGCGGCUGuCGAACuCGaCCGa -3' miRNA: 3'- uuGC-CCGa--CGCCGACuGCUUG-GC-GGC- -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 49590 | 0.68 | 0.292841 |
Target: 5'- -cCGGGCgGUGGcCUGGCaguGCUGCCGc -3' miRNA: 3'- uuGCCCGaCGCC-GACUGcu-UGGCGGC- -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 43921 | 0.68 | 0.297863 |
Target: 5'- -uCGGGC-GCGaGCUGAgCGGgaaucaggucgcccGCCGCCGc -3' miRNA: 3'- uuGCCCGaCGC-CGACU-GCU--------------UGGCGGC- -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 45862 | 0.68 | 0.314832 |
Target: 5'- cGCGagcuGCUGCGGCUG-CGcGCCGCgGc -3' miRNA: 3'- uUGCc---CGACGCCGACuGCuUGGCGgC- -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 29216 | 0.68 | 0.307366 |
Target: 5'- --gGGGUcggcGCGGUUGGCcgggcaccaGAACCGCCGc -3' miRNA: 3'- uugCCCGa---CGCCGACUG---------CUUGGCGGC- -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 39062 | 0.68 | 0.285782 |
Target: 5'- cGACGGcGCccuCGGC-GAcCGAGCCGCCGc -3' miRNA: 3'- -UUGCC-CGac-GCCGaCU-GCUUGGCGGC- -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 23822 | 0.68 | 0.285782 |
Target: 5'- -uCGGGCgGUGGCccGGCGcccgcgccuaAGCCGCCGc -3' miRNA: 3'- uuGCCCGaCGCCGa-CUGC----------UUGGCGGC- -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 20177 | 0.69 | 0.265411 |
Target: 5'- --aGGGC-GCGGUUGAUGcGCUGCUGc -3' miRNA: 3'- uugCCCGaCGCCGACUGCuUGGCGGC- -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 22698 | 0.69 | 0.258886 |
Target: 5'- cGGCGGcGCUGgCGGCcugGGCGAuACCGaCCa -3' miRNA: 3'- -UUGCC-CGAC-GCCGa--CUGCU-UGGC-GGc -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 19906 | 0.69 | 0.258241 |
Target: 5'- uGCGGGCUGC-GCUGAgauugcuUGAGCUGCg- -3' miRNA: 3'- uUGCCCGACGcCGACU-------GCUUGGCGgc -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 15806 | 0.69 | 0.272067 |
Target: 5'- cAGCGGGgUGCcGCUGuC--GCCGCCGg -3' miRNA: 3'- -UUGCCCgACGcCGACuGcuUGGCGGC- -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 10668 | 0.69 | 0.252494 |
Target: 5'- cGACGcGGCUGCGaccacggccGCcucGGCGGugGCCGCCGg -3' miRNA: 3'- -UUGC-CCGACGC---------CGa--CUGCU--UGGCGGC- -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 13842 | 0.69 | 0.271396 |
Target: 5'- cACGGuucggcgcgucuaGCUaaCGGCcGGCGAGCCGCCGa -3' miRNA: 3'- uUGCC-------------CGAc-GCCGaCUGCUUGGCGGC- -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 38933 | 0.69 | 0.272067 |
Target: 5'- cAACGuGGCcgcugaucUGCGGCgacGCGAAUUGCCGg -3' miRNA: 3'- -UUGC-CCG--------ACGCCGac-UGCUUGGCGGC- -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 39231 | 0.69 | 0.246232 |
Target: 5'- gAGCGGGUacCGGCgccgGGCGAgGCCGUCGa -3' miRNA: 3'- -UUGCCCGacGCCGa---CUGCU-UGGCGGC- -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 45515 | 0.7 | 0.234094 |
Target: 5'- --aGGGCcgcaGCGaGCUGACGGugUGCUGg -3' miRNA: 3'- uugCCCGa---CGC-CGACUGCUugGCGGC- -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 5840 | 0.7 | 0.234094 |
Target: 5'- -uCGGGCUGCGccGCagGugGGGgCGCCGc -3' miRNA: 3'- uuGCCCGACGC--CGa-CugCUUgGCGGC- -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 17011 | 0.7 | 0.234689 |
Target: 5'- gAGCGGGCgcuaaucaaaccgcgGCGGCUGcCGcccUCGCCGg -3' miRNA: 3'- -UUGCCCGa--------------CGCCGACuGCuu-GGCGGC- -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 35671 | 0.71 | 0.195527 |
Target: 5'- cGCGGGCgGUGGCUGAgCGGGCaCGUg- -3' miRNA: 3'- uUGCCCGaCGCCGACU-GCUUG-GCGgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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