Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
12819 | 5' | -61 | NC_003387.1 | + | 28215 | 1.07 | 0.000362 |
Target: 5'- gAACGGGCUGCGGCUGACGAACCGCCGg -3' miRNA: 3'- -UUGCCCGACGCCGACUGCUUGGCGGC- -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 48937 | 0.77 | 0.067585 |
Target: 5'- cGGCGGGUUGCuGGCgGGCGGGCUGCuCGg -3' miRNA: 3'- -UUGCCCGACG-CCGaCUGCUUGGCG-GC- -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 45247 | 0.76 | 0.084523 |
Target: 5'- cGAUGGGCUggacGCGGCUGGaaUGGAUCGCCa -3' miRNA: 3'- -UUGCCCGA----CGCCGACU--GCUUGGCGGc -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 28376 | 0.76 | 0.079943 |
Target: 5'- gGGCGGGCgcaacucGUGGCUGACGcaggaaacGAUCGCCGa -3' miRNA: 3'- -UUGCCCGa------CGCCGACUGC--------UUGGCGGC- -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 33987 | 0.75 | 0.091865 |
Target: 5'- cAGCGGGUcGCGGUcgacGACGAGCUGCCu -3' miRNA: 3'- -UUGCCCGaCGCCGa---CUGCUUGGCGGc -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 40360 | 0.73 | 0.124268 |
Target: 5'- uGCGGGCcgucgcgGCGGCguuggUGAUGAACuCGCCGu -3' miRNA: 3'- uUGCCCGa------CGCCG-----ACUGCUUG-GCGGC- -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 38056 | 0.73 | 0.1348 |
Target: 5'- -uCGGGCgGUGGCUGAgCGAG-CGCCGc -3' miRNA: 3'- uuGCCCGaCGCCGACU-GCUUgGCGGC- -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 25384 | 0.72 | 0.154189 |
Target: 5'- cGAgGGGCUGCGGCUgcucGACGAGaaggCGCgCGa -3' miRNA: 3'- -UUgCCCGACGCCGA----CUGCUUg---GCG-GC- -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 32330 | 0.72 | 0.16263 |
Target: 5'- cAUGGaccGCUGCGGCUGAUc-GCCGCCu -3' miRNA: 3'- uUGCC---CGACGCCGACUGcuUGGCGGc -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 48984 | 0.72 | 0.157938 |
Target: 5'- cGCGGGCaUGCGGCcGuCGAucgcguggcugugGCCGCUGg -3' miRNA: 3'- uUGCCCG-ACGCCGaCuGCU-------------UGGCGGC- -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 44927 | 0.72 | 0.158359 |
Target: 5'- -cCGGGCUGgGGC-GACGAGgCGCUc -3' miRNA: 3'- uuGCCCGACgCCGaCUGCUUgGCGGc -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 44875 | 0.71 | 0.176072 |
Target: 5'- --aGGuGCUGgcCGaGCUGACGcAGCCGCCGg -3' miRNA: 3'- uugCC-CGAC--GC-CGACUGC-UUGGCGGC- -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 35671 | 0.71 | 0.195527 |
Target: 5'- cGCGGGCgGUGGCUGAgCGGGCaCGUg- -3' miRNA: 3'- uUGCCCGaCGCCGACU-GCUUG-GCGgc -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 40492 | 0.71 | 0.171485 |
Target: 5'- gAGCGccGCUGC-GCUGGCG-ACCGCCGg -3' miRNA: 3'- -UUGCc-CGACGcCGACUGCuUGGCGGC- -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 5840 | 0.7 | 0.234094 |
Target: 5'- -uCGGGCUGCGccGCagGugGGGgCGCCGc -3' miRNA: 3'- uuGCCCGACGC--CGa-CugCUUgGCGGC- -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 17011 | 0.7 | 0.234689 |
Target: 5'- gAGCGGGCgcuaaucaaaccgcgGCGGCUGcCGcccUCGCCGg -3' miRNA: 3'- -UUGCCCGa--------------CGCCGACuGCuu-GGCGGC- -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 45515 | 0.7 | 0.234094 |
Target: 5'- --aGGGCcgcaGCGaGCUGACGGugUGCUGg -3' miRNA: 3'- uugCCCGa---CGC-CGACUGCUugGCGGC- -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 19906 | 0.69 | 0.258241 |
Target: 5'- uGCGGGCUGC-GCUGAgauugcuUGAGCUGCg- -3' miRNA: 3'- uUGCCCGACGcCGACU-------GCUUGGCGgc -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 22698 | 0.69 | 0.258886 |
Target: 5'- cGGCGGcGCUGgCGGCcugGGCGAuACCGaCCa -3' miRNA: 3'- -UUGCC-CGAC-GCCGa--CUGCU-UGGC-GGc -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 20177 | 0.69 | 0.265411 |
Target: 5'- --aGGGC-GCGGUUGAUGcGCUGCUGc -3' miRNA: 3'- uugCCCGaCGCCGACUGCuUGGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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