Results 41 - 53 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
12819 | 5' | -61 | NC_003387.1 | + | 7329 | 0.67 | 0.354207 |
Target: 5'- cGAUcGGCUcggGCGGCcgGGCGcagcuAACCGCCGg -3' miRNA: 3'- -UUGcCCGA---CGCCGa-CUGC-----UUGGCGGC- -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 7272 | 0.67 | 0.357503 |
Target: 5'- uGACGGGUU-CGGCgUGACGuucacgcccggcgguAACuCGCCGg -3' miRNA: 3'- -UUGCCCGAcGCCG-ACUGC---------------UUG-GCGGC- -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 21020 | 0.67 | 0.362488 |
Target: 5'- -cCGGGCUGUcaacauGGCUGACcg-UCGCCa -3' miRNA: 3'- uuGCCCGACG------CCGACUGcuuGGCGGc -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 21494 | 0.66 | 0.370901 |
Target: 5'- -cCGGGCUGguuCGugucGCUGcACGAGCCgGCCGc -3' miRNA: 3'- uuGCCCGAC---GC----CGAC-UGCUUGG-CGGC- -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 4552 | 0.66 | 0.370901 |
Target: 5'- uGCGGGcCUGCGcCUGcGCGA-CCGCgCGg -3' miRNA: 3'- uUGCCC-GACGCcGAC-UGCUuGGCG-GC- -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 26580 | 0.66 | 0.370901 |
Target: 5'- -uCGGGgUcaggccgcgcgaGCGGC-GACGGACgCGCCGa -3' miRNA: 3'- uuGCCCgA------------CGCCGaCUGCUUG-GCGGC- -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 26703 | 0.66 | 0.379448 |
Target: 5'- cGGCGGGUUgGUGGC-GAUGAACCcgacaCCGg -3' miRNA: 3'- -UUGCCCGA-CGCCGaCUGCUUGGc----GGC- -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 44636 | 0.66 | 0.388125 |
Target: 5'- gGGCGGGUUGgcgccgacCGGCaGcggguuagcGCGGGCCGCCa -3' miRNA: 3'- -UUGCCCGAC--------GCCGaC---------UGCUUGGCGGc -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 34851 | 0.66 | 0.388125 |
Target: 5'- cGCGGGCcuUGCGGUga--GAGCaGCCGg -3' miRNA: 3'- uUGCCCG--ACGCCGacugCUUGgCGGC- -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 45293 | 0.66 | 0.396932 |
Target: 5'- gGGCGGGCaucUGUGGCUuuCGGACguuUGCCa -3' miRNA: 3'- -UUGCCCG---ACGCCGAcuGCUUG---GCGGc -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 22357 | 0.66 | 0.405866 |
Target: 5'- cAGCGaGCUGCaGGCgGuCGAcucgugaaugugGCCGCCGg -3' miRNA: 3'- -UUGCcCGACG-CCGaCuGCU------------UGGCGGC- -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 40618 | 0.66 | 0.405866 |
Target: 5'- aGGCGGGCcgGUGGCgUGGuuuugGGACCGUCa -3' miRNA: 3'- -UUGCCCGa-CGCCG-ACUg----CUUGGCGGc -5' |
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12819 | 5' | -61 | NC_003387.1 | + | 12955 | 0.66 | 0.414925 |
Target: 5'- cACGucGGCgucugGCGGCUGuacCGGGCgGCCa -3' miRNA: 3'- uUGC--CCGa----CGCCGACu--GCUUGgCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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