miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12819 5' -61 NC_003387.1 + 1116 0.67 0.322435
Target:  5'- cGCGGGUU-CGGCcGugGGuUCGCCGg -3'
miRNA:   3'- uUGCCCGAcGCCGaCugCUuGGCGGC- -5'
12819 5' -61 NC_003387.1 + 1627 0.67 0.322435
Target:  5'- -uCGGcGCgUGCuGGCUGAUGGacgacgacgGCCGCCa -3'
miRNA:   3'- uuGCC-CG-ACG-CCGACUGCU---------UGGCGGc -5'
12819 5' -61 NC_003387.1 + 1840 0.67 0.344448
Target:  5'- --aGGGCUGCGGCcuguuugagaacGGCGucaaCGCCGa -3'
miRNA:   3'- uugCCCGACGCCGa-----------CUGCuug-GCGGC- -5'
12819 5' -61 NC_003387.1 + 1946 0.67 0.346061
Target:  5'- cGACGcaggcGGUUGgGGCUG--GGACCGCCGc -3'
miRNA:   3'- -UUGC-----CCGACgCCGACugCUUGGCGGC- -5'
12819 5' -61 NC_003387.1 + 4552 0.66 0.370901
Target:  5'- uGCGGGcCUGCGcCUGcGCGA-CCGCgCGg -3'
miRNA:   3'- uUGCCC-GACGCcGAC-UGCUuGGCG-GC- -5'
12819 5' -61 NC_003387.1 + 5840 0.7 0.234094
Target:  5'- -uCGGGCUGCGccGCagGugGGGgCGCCGc -3'
miRNA:   3'- uuGCCCGACGC--CGa-CugCUUgGCGGC- -5'
12819 5' -61 NC_003387.1 + 7272 0.67 0.357503
Target:  5'- uGACGGGUU-CGGCgUGACGuucacgcccggcgguAACuCGCCGg -3'
miRNA:   3'- -UUGCCCGAcGCCG-ACUGC---------------UUG-GCGGC- -5'
12819 5' -61 NC_003387.1 + 7329 0.67 0.354207
Target:  5'- cGAUcGGCUcggGCGGCcgGGCGcagcuAACCGCCGg -3'
miRNA:   3'- -UUGcCCGA---CGCCGa-CUGC-----UUGGCGGC- -5'
12819 5' -61 NC_003387.1 + 10668 0.69 0.252494
Target:  5'- cGACGcGGCUGCGaccacggccGCcucGGCGGugGCCGCCGg -3'
miRNA:   3'- -UUGC-CCGACGC---------CGa--CUGCU--UGGCGGC- -5'
12819 5' -61 NC_003387.1 + 12955 0.66 0.414925
Target:  5'- cACGucGGCgucugGCGGCUGuacCGGGCgGCCa -3'
miRNA:   3'- uUGC--CCGa----CGCCGACu--GCUUGgCGGc -5'
12819 5' -61 NC_003387.1 + 13842 0.69 0.271396
Target:  5'- cACGGuucggcgcgucuaGCUaaCGGCcGGCGAGCCGCCGa -3'
miRNA:   3'- uUGCC-------------CGAc-GCCGaCUGCUUGGCGGC- -5'
12819 5' -61 NC_003387.1 + 15806 0.69 0.272067
Target:  5'- cAGCGGGgUGCcGCUGuC--GCCGCCGg -3'
miRNA:   3'- -UUGCCCgACGcCGACuGcuUGGCGGC- -5'
12819 5' -61 NC_003387.1 + 15990 0.67 0.330175
Target:  5'- -uCGGGCcGCacuGGCUGGucCGGuacgGCCGCCGa -3'
miRNA:   3'- uuGCCCGaCG---CCGACU--GCU----UGGCGGC- -5'
12819 5' -61 NC_003387.1 + 17011 0.7 0.234689
Target:  5'- gAGCGGGCgcuaaucaaaccgcgGCGGCUGcCGcccUCGCCGg -3'
miRNA:   3'- -UUGCCCGa--------------CGCCGACuGCuu-GGCGGC- -5'
12819 5' -61 NC_003387.1 + 19906 0.69 0.258241
Target:  5'- uGCGGGCUGC-GCUGAgauugcuUGAGCUGCg- -3'
miRNA:   3'- uUGCCCGACGcCGACU-------GCUUGGCGgc -5'
12819 5' -61 NC_003387.1 + 20177 0.69 0.265411
Target:  5'- --aGGGC-GCGGUUGAUGcGCUGCUGc -3'
miRNA:   3'- uugCCCGaCGCCGACUGCuUGGCGGC- -5'
12819 5' -61 NC_003387.1 + 21020 0.67 0.362488
Target:  5'- -cCGGGCUGUcaacauGGCUGACcg-UCGCCa -3'
miRNA:   3'- uuGCCCGACG------CCGACUGcuuGGCGGc -5'
12819 5' -61 NC_003387.1 + 21494 0.66 0.370901
Target:  5'- -cCGGGCUGguuCGugucGCUGcACGAGCCgGCCGc -3'
miRNA:   3'- uuGCCCGAC---GC----CGAC-UGCUUGG-CGGC- -5'
12819 5' -61 NC_003387.1 + 22357 0.66 0.405866
Target:  5'- cAGCGaGCUGCaGGCgGuCGAcucgugaaugugGCCGCCGg -3'
miRNA:   3'- -UUGCcCGACG-CCGaCuGCU------------UGGCGGC- -5'
12819 5' -61 NC_003387.1 + 22698 0.69 0.258886
Target:  5'- cGGCGGcGCUGgCGGCcugGGCGAuACCGaCCa -3'
miRNA:   3'- -UUGCC-CGAC-GCCGa--CUGCU-UGGC-GGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.