miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12819 5' -61 NC_003387.1 + 23822 0.68 0.285782
Target:  5'- -uCGGGCgGUGGCccGGCGcccgcgccuaAGCCGCCGc -3'
miRNA:   3'- uuGCCCGaCGCCGa-CUGC----------UUGGCGGC- -5'
12819 5' -61 NC_003387.1 + 24879 0.67 0.330175
Target:  5'- -uCGuGGCgccGCGGCUGuCGAACuCGaCCGa -3'
miRNA:   3'- uuGC-CCGa--CGCCGACuGCUUG-GC-GGC- -5'
12819 5' -61 NC_003387.1 + 25384 0.72 0.154189
Target:  5'- cGAgGGGCUGCGGCUgcucGACGAGaaggCGCgCGa -3'
miRNA:   3'- -UUgCCCGACGCCGA----CUGCUUg---GCG-GC- -5'
12819 5' -61 NC_003387.1 + 26580 0.66 0.370901
Target:  5'- -uCGGGgUcaggccgcgcgaGCGGC-GACGGACgCGCCGa -3'
miRNA:   3'- uuGCCCgA------------CGCCGaCUGCUUG-GCGGC- -5'
12819 5' -61 NC_003387.1 + 26703 0.66 0.379448
Target:  5'- cGGCGGGUUgGUGGC-GAUGAACCcgacaCCGg -3'
miRNA:   3'- -UUGCCCGA-CGCCGaCUGCUUGGc----GGC- -5'
12819 5' -61 NC_003387.1 + 27499 0.67 0.337256
Target:  5'- gAGC-GGCUGUGGC--GCGAagauccgGCCGCCGc -3'
miRNA:   3'- -UUGcCCGACGCCGacUGCU-------UGGCGGC- -5'
12819 5' -61 NC_003387.1 + 28215 1.07 0.000362
Target:  5'- gAACGGGCUGCGGCUGACGAACCGCCGg -3'
miRNA:   3'- -UUGCCCGACGCCGACUGCUUGGCGGC- -5'
12819 5' -61 NC_003387.1 + 28376 0.76 0.079943
Target:  5'- gGGCGGGCgcaacucGUGGCUGACGcaggaaacGAUCGCCGa -3'
miRNA:   3'- -UUGCCCGa------CGCCGACUGC--------UUGGCGGC- -5'
12819 5' -61 NC_003387.1 + 29216 0.68 0.307366
Target:  5'- --gGGGUcggcGCGGUUGGCcgggcaccaGAACCGCCGc -3'
miRNA:   3'- uugCCCGa---CGCCGACUG---------CUUGGCGGC- -5'
12819 5' -61 NC_003387.1 + 32330 0.72 0.16263
Target:  5'- cAUGGaccGCUGCGGCUGAUc-GCCGCCu -3'
miRNA:   3'- uUGCC---CGACGCCGACUGcuUGGCGGc -5'
12819 5' -61 NC_003387.1 + 33987 0.75 0.091865
Target:  5'- cAGCGGGUcGCGGUcgacGACGAGCUGCCu -3'
miRNA:   3'- -UUGCCCGaCGCCGa---CUGCUUGGCGGc -5'
12819 5' -61 NC_003387.1 + 34851 0.66 0.388125
Target:  5'- cGCGGGCcuUGCGGUga--GAGCaGCCGg -3'
miRNA:   3'- uUGCCCG--ACGCCGacugCUUGgCGGC- -5'
12819 5' -61 NC_003387.1 + 35671 0.71 0.195527
Target:  5'- cGCGGGCgGUGGCUGAgCGGGCaCGUg- -3'
miRNA:   3'- uUGCCCGaCGCCGACU-GCUUG-GCGgc -5'
12819 5' -61 NC_003387.1 + 38056 0.73 0.1348
Target:  5'- -uCGGGCgGUGGCUGAgCGAG-CGCCGc -3'
miRNA:   3'- uuGCCCGaCGCCGACU-GCUUgGCGGC- -5'
12819 5' -61 NC_003387.1 + 38933 0.69 0.272067
Target:  5'- cAACGuGGCcgcugaucUGCGGCgacGCGAAUUGCCGg -3'
miRNA:   3'- -UUGC-CCG--------ACGCCGac-UGCUUGGCGGC- -5'
12819 5' -61 NC_003387.1 + 39062 0.68 0.285782
Target:  5'- cGACGGcGCccuCGGC-GAcCGAGCCGCCGc -3'
miRNA:   3'- -UUGCC-CGac-GCCGaCU-GCUUGGCGGC- -5'
12819 5' -61 NC_003387.1 + 39231 0.69 0.246232
Target:  5'- gAGCGGGUacCGGCgccgGGCGAgGCCGUCGa -3'
miRNA:   3'- -UUGCCCGacGCCGa---CUGCU-UGGCGGC- -5'
12819 5' -61 NC_003387.1 + 40360 0.73 0.124268
Target:  5'- uGCGGGCcgucgcgGCGGCguuggUGAUGAACuCGCCGu -3'
miRNA:   3'- uUGCCCGa------CGCCG-----ACUGCUUG-GCGGC- -5'
12819 5' -61 NC_003387.1 + 40492 0.71 0.171485
Target:  5'- gAGCGccGCUGC-GCUGGCG-ACCGCCGg -3'
miRNA:   3'- -UUGCc-CGACGcCGACUGCuUGGCGGC- -5'
12819 5' -61 NC_003387.1 + 40618 0.66 0.405866
Target:  5'- aGGCGGGCcgGUGGCgUGGuuuugGGACCGUCa -3'
miRNA:   3'- -UUGCCCGa-CGCCG-ACUg----CUUGGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.