miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
12819 5' -61 NC_003387.1 + 49590 0.68 0.292841
Target:  5'- -cCGGGCgGUGGcCUGGCaguGCUGCCGc -3'
miRNA:   3'- uuGCCCGaCGCC-GACUGcu-UGGCGGC- -5'
12819 5' -61 NC_003387.1 + 48984 0.72 0.157938
Target:  5'- cGCGGGCaUGCGGCcGuCGAucgcguggcugugGCCGCUGg -3'
miRNA:   3'- uUGCCCG-ACGCCGaCuGCU-------------UGGCGGC- -5'
12819 5' -61 NC_003387.1 + 48937 0.77 0.067585
Target:  5'- cGGCGGGUUGCuGGCgGGCGGGCUGCuCGg -3'
miRNA:   3'- -UUGCCCGACG-CCGaCUGCUUGGCG-GC- -5'
12819 5' -61 NC_003387.1 + 45862 0.68 0.314832
Target:  5'- cGCGagcuGCUGCGGCUG-CGcGCCGCgGc -3'
miRNA:   3'- uUGCc---CGACGCCGACuGCuUGGCGgC- -5'
12819 5' -61 NC_003387.1 + 45515 0.7 0.234094
Target:  5'- --aGGGCcgcaGCGaGCUGACGGugUGCUGg -3'
miRNA:   3'- uugCCCGa---CGC-CGACUGCUugGCGGC- -5'
12819 5' -61 NC_003387.1 + 45293 0.66 0.396932
Target:  5'- gGGCGGGCaucUGUGGCUuuCGGACguuUGCCa -3'
miRNA:   3'- -UUGCCCG---ACGCCGAcuGCUUG---GCGGc -5'
12819 5' -61 NC_003387.1 + 45247 0.76 0.084523
Target:  5'- cGAUGGGCUggacGCGGCUGGaaUGGAUCGCCa -3'
miRNA:   3'- -UUGCCCGA----CGCCGACU--GCUUGGCGGc -5'
12819 5' -61 NC_003387.1 + 44927 0.72 0.158359
Target:  5'- -cCGGGCUGgGGC-GACGAGgCGCUc -3'
miRNA:   3'- uuGCCCGACgCCGaCUGCUUgGCGGc -5'
12819 5' -61 NC_003387.1 + 44875 0.71 0.176072
Target:  5'- --aGGuGCUGgcCGaGCUGACGcAGCCGCCGg -3'
miRNA:   3'- uugCC-CGAC--GC-CGACUGC-UUGGCGGC- -5'
12819 5' -61 NC_003387.1 + 44636 0.66 0.388125
Target:  5'- gGGCGGGUUGgcgccgacCGGCaGcggguuagcGCGGGCCGCCa -3'
miRNA:   3'- -UUGCCCGAC--------GCCGaC---------UGCUUGGCGGc -5'
12819 5' -61 NC_003387.1 + 43921 0.68 0.297863
Target:  5'- -uCGGGC-GCGaGCUGAgCGGgaaucaggucgcccGCCGCCGc -3'
miRNA:   3'- uuGCCCGaCGC-CGACU-GCU--------------UGGCGGC- -5'
12819 5' -61 NC_003387.1 + 41148 0.67 0.354207
Target:  5'- cGACGGccGCUGCGaGUgucagGGCGAguGCgGCCGg -3'
miRNA:   3'- -UUGCC--CGACGC-CGa----CUGCU--UGgCGGC- -5'
12819 5' -61 NC_003387.1 + 40919 0.67 0.33805
Target:  5'- -uCGGGCgGUGGcCUGAUGGACgGCg- -3'
miRNA:   3'- uuGCCCGaCGCC-GACUGCUUGgCGgc -5'
12819 5' -61 NC_003387.1 + 40618 0.66 0.405866
Target:  5'- aGGCGGGCcgGUGGCgUGGuuuugGGACCGUCa -3'
miRNA:   3'- -UUGCCCGa-CGCCG-ACUg----CUUGGCGGc -5'
12819 5' -61 NC_003387.1 + 40492 0.71 0.171485
Target:  5'- gAGCGccGCUGC-GCUGGCG-ACCGCCGg -3'
miRNA:   3'- -UUGCc-CGACGcCGACUGCuUGGCGGC- -5'
12819 5' -61 NC_003387.1 + 40360 0.73 0.124268
Target:  5'- uGCGGGCcgucgcgGCGGCguuggUGAUGAACuCGCCGu -3'
miRNA:   3'- uUGCCCGa------CGCCG-----ACUGCUUG-GCGGC- -5'
12819 5' -61 NC_003387.1 + 39231 0.69 0.246232
Target:  5'- gAGCGGGUacCGGCgccgGGCGAgGCCGUCGa -3'
miRNA:   3'- -UUGCCCGacGCCGa---CUGCU-UGGCGGC- -5'
12819 5' -61 NC_003387.1 + 39062 0.68 0.285782
Target:  5'- cGACGGcGCccuCGGC-GAcCGAGCCGCCGc -3'
miRNA:   3'- -UUGCC-CGac-GCCGaCU-GCUUGGCGGC- -5'
12819 5' -61 NC_003387.1 + 38933 0.69 0.272067
Target:  5'- cAACGuGGCcgcugaucUGCGGCgacGCGAAUUGCCGg -3'
miRNA:   3'- -UUGC-CCG--------ACGCCGac-UGCUUGGCGGC- -5'
12819 5' -61 NC_003387.1 + 38056 0.73 0.1348
Target:  5'- -uCGGGCgGUGGCUGAgCGAG-CGCCGc -3'
miRNA:   3'- uuGCCCGaCGCCGACU-GCUUgGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.